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AGRP

Asteraceae Genomic Research Platform

AGRP Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21653 ATGAACGAGTCGATCACCGAGTCAGACTCACCACCGTTGCCGAGTCTCAAAGAGGTTGAGATGATCATAGGTTACAAATTCAAAAACAAAGAACTGTTAATAGAAGCTTTTACGCATCATTCATTCAAAGATGAAGATTGTCAATCTTACGAGCGACTCGAGTACCTTGGAGACTCGGTTTTGAACCTTATGATAGCCAAAGAACATTATTTCTCATATCCGAAGATGAACACGGGTGAGTTGACTCAACTTCGTGCTGCCAATGTGGACACTGAAGCGTTGGCTCGTGTTGCGTTTAAACATGGCTTGCATAGGTTTCTCAGACACCAAGATCCTTTACTCGACGGACGGATACAAGAACTTATAGAAGGAATTAAAGAATACCCATTACATTCTCATGGTTTGATCAACTCACCCAAGATACTCGCAGATATTGTTGAGTCGGTAGTTGGTGCAGTCTACGTTGATACCAATTTATCGATTGATGCCACATGGGAGGTTGTGAAGAACTTGTTACAACCTTTGATTACACCAGAGAACCTTAACTTAAACCCTGTGACGAAGTTGAATCAAACGTGCCAAAAGATGGGGATCAAAATAGAGTACAAAAATATGTGGATCGAAACGGGGGATATCGAAGTATATATAGGAAACGAGCTAATTGGGAAAGGAAACTACAAGAAAAAGAAAATAACTGCAAAGAACAAAGCAGCTGCTGATGCATATGAGAATCTTGTCAAACAACTAGGCATGAAAGACTTTGATCAACTTTTAATCTAG 780 40.13 MNESITESDSPPLPSLKEVEMIIGYKFKNKELLIEAFTHHSFKDEDCQSYERLEYLGDSVLNLMIAKEHYFSYPKMNTGELTQLRAANVDTEALARVAFKHGLHRFLRHQDPLLDGRIQELIEGIKEYPLHSHGLINSPKILADIVESVVGAVYVDTNLSIDATWEVVKNLLQPLITPENLNLNPVTKLNQTCQKMGIKIEYKNMWIETGDIEVYIGNELIGKGNYKKKKITAKNKAAADAYENLVKQLGMKDFDQLLI 259
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21653 259 SMART riboneu5 31 181 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g21653 259 Pfam Double-stranded RNA binding motif 185 245 IPR014720 -
Pslu1g21653 259 SUPERFAMILY RNase III domain-like 16 178 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g21653 259 ProSiteProfiles Ribonuclease III family domain profile. 16 158 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g21653 259 SUPERFAMILY dsRNA-binding domain-like 140 245 - -
Pslu1g21653 259 Gene3D - 181 249 - -
Pslu1g21653 259 ProSitePatterns Ribonuclease III family signature. 51 59 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g21653 259 PANTHER DICER-RELATED 13 248 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Pslu1g21653 259 CDD RIBOc 31 181 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g21653 259 FunFam Endoribonuclease dicer-like 1 12 179 - -
Pslu1g21653 259 Pfam Ribonuclease III domain 51 157 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Pslu1g21653 259 Gene3D Ribonuclease III domain 13 180 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21653 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
134975 Pslu1g21653 Pslu5g15320
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:155445644 Pslu5g15320 Pslu-Chr5:111917268 dispersed
Pslu Pslu-Chr1:155443428 Pslu1g21653 Pslu-Chr1:155445644 tandem