AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21657 ATGACTGCAAAAAGGAGATTTCTACCTATTAGACGCCAAATTCCACCATTAGTTTCAAACTTTTTGAAATTATTCTTTATCTTATTCTGTTTCGTTGTTGCTTTCGGACTATTTTCTCACTTTAAACTTCAATCGCCATCTATAGCTACTGAATTTGGATTTAATGAGTTCCTTATGGATAATTATCGTATGAAGATCGCTTTCCTGTTTCTCGTTCGTGATAATATTCCTCTTGATTTCCTCTGGCACAATTTCTTCAAGAATGCAGATCCTGAGAATTTTACGATATACATACACTCAAAGCCTGGTTTGGTGTTCGATGAATTAGTTACTAGATCAGTCTACTTCCACAATCGACAGTTGGAAAACAGTATTGAGGTGGGCTGGGGTAAGCCGACTATGATTGAAGCTGAGAAGCTCTTGTTTAAGGCAGCCCTTGACGATATAAGCAATCAGATATTCGTTCTCGTCTCTGACAGTTGCGTCCCACTATACGATTTCAGTTACATATACACATATCTCATGTCATCTCCAAGAAGCTTTGTGGACAGCTTTATTGATGATGCAACCGAAAAACGCTATAATCCAGAGATGTCCCCTGACATACCTGAAGACAAATGGCGGAAGGGATCCCAGTGGATCACATTGATCAGAAGGCATGCAGAGGTGGTTGCATATGATCATGTTATATTCCCAATCTTTAACAAACACTGCAAGCGGCGTCCACTTCTAGACTTGAGCAAGGGAAATGAGTCTCTTATTGAGCAGCAGCAACACAATTGTATCCCAGATGAACATTATGTGCCCACCTTACTTAGAATGCGAGGCATTGAAGAGGAATTAGAGCGAAGAACGTTGACTTATTCTTTATGGAATCAGTCTACTGAAACGATGAATACACAAGCTTGGCACCCTGTAACATTTGGCTATGCAACTGCCAGCCAGAAAAATATTCAAGATATCAAGGATATTGACCATATTTATTTCAAATCTGAGAACCGGACAGAATGGTGTGGTACCAAATTTAATAGCGGTCATTGTTACTTATTTGCTAGGAAGTTCTCTCGTGGCGCAGCTATGCGCCTTTTGACTAATGGGGTGGTTGGTCCATATGATCCCAACACATTGTTCTTAGACCGGACTTAG 1146 40.23 MTAKRRFLPIRRQIPPLVSNFLKLFFILFCFVVAFGLFSHFKLQSPSIATEFGFNEFLMDNYRMKIAFLFLVRDNIPLDFLWHNFFKNADPENFTIYIHSKPGLVFDELVTRSVYFHNRQLENSIEVGWGKPTMIEAEKLLFKAALDDISNQIFVLVSDSCVPLYDFSYIYTYLMSSPRSFVDSFIDDATEKRYNPEMSPDIPEDKWRKGSQWITLIRRHAEVVAYDHVIFPIFNKHCKRRPLLDLSKGNESLIEQQQHNCIPDEHYVPTLLRMRGIEEELERRTLTYSLWNQSTETMNTQAWHPVTFGYATASQKNIQDIKDIDHIYFKSENRTEWCGTKFNSGHCYLFARKFSRGAAMRLLTNGVVGPYDPNTLFLDRT 381
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21657 381 Pfam Core-2-I-Branching enzyme 66 321 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
Pslu1g21657 381 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 42 363 IPR044174 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21657 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:30376980 Pslu1g21657 Pslu-Chr1:155464304 dispersed
Pslu Pslu-Chr1:155464304 Pslu2g02159 Pslu-Chr2:14281405 dispersed
Pslu Pslu-Chr1:155464304 Pslu1g07397 Pslu-Chr1:50465094 transposed