AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21690 ATGGTGAGTCGATGTTGCACCAGTAATAGTCAATGGCTAATTATCCGATTTGCATTGCTGCTGCTACTTCTCCGGAAAATTACTAGTTTTGATGATCTACGATCGCCGGTTGAGTCTCCACCTTCTTTCGATCCTCAACCTGATCTTCCGTTACTCGCGCCTTCACCTTTGATGCCATACACGGATGTTGGTGTGCCAATCTTATCAGGGAAGTGCCCATTGAACTTTTCAAATGCCGAAACAGTGCTAACCACAACAGCAATTGATTGTTGGGGTTCGCTAGCTCCATATCTAGCAAATGCAGTATGTTGTCCTCAACTCGATGCCACAATAAAGATCCTAATAGGCCAATCTAGTTTCTCTTCTGGGACTCTTGCCGTAAATGAAACCCATGCCAAAGATTGCCTCTCAGATATTGCACAAATTTTGGAAGCTGAAGGCTCCAACAACCAACTTCTCAAAATATGCTTGATTCACCCATCAGATGTTGCTCAGGCTTCTTGCCCTATTGTAGATGTTACTGAAATTGAGAAGATTATTAACATTCCTACAATTATTGAATCTTGTGAAAAGATTGATCCGGTGAAAGAGTGTCACCACCAAGTATGTCAAAGTGCTATAACGGAAGCTGCTGTGAGGATTGCTTCAAGAAATTATAGTGTGTCGAATATGGTTGAAGGTTCTATATCAGTAGCTAGTGAATCTATGATCGATGATTGTAAGAAGATTGTGCTTAGATGGCTGGCAAGTAAACTTGACCCGCCTTATGCAAGCAAAGTATTACGAGGAATTTCTAGTTGCAAGATCAACCAAGTTTGTCCGCTTATCTTTCCTGAAATGAAGAATGTTTTGAAAGAATGTGGAAATACAATTAGTAATCAGACAGCTTGTTGTGGTGAAATGAAGAATTATGTTACTCAATTGCAAGATCAAAGCTTCGTTACTAACTTGCAAGCCTTCCATTGTGCTTATTCACTTGCTGCAAATTTGCAAAAGGATAACGTTTCCACCAATGTTTATGATATTTGTCGTGTAAAGCTTAAAGATTTCTCCCTCCAAGACTCTGGCTGTCTCTTTCCAAGCTTGCCTTTTGATGTGACGTATGATGAAAGTTCGGGAATTGGTTTCAAATGTGACCTTAATGATAACGTTGCAGCTCCATGGCCTTCGTCTAAGGGTTATTCTGCTTCTCCATCATCTAATTCAAGCACAGTGCTTCCAGCACTTCCTAAAGCAGCATCTGATCAGAGTGGGCTGCGGAGTACTCTGTTCATTTCAAGTTTGTTGGTACTCAACTTGTTCATTTGA 1308 40.75 MVSRCCTSNSQWLIIRFALLLLLLRKITSFDDLRSPVESPPSFDPQPDLPLLAPSPLMPYTDVGVPILSGKCPLNFSNAETVLTTTAIDCWGSLAPYLANAVCCPQLDATIKILIGQSSFSSGTLAVNETHAKDCLSDIAQILEAEGSNNQLLKICLIHPSDVAQASCPIVDVTEIEKIINIPTIIESCEKIDPVKECHHQVCQSAITEAAVRIASRNYSVSNMVEGSISVASESMIDDCKKIVLRWLASKLDPPYASKVLRGISSCKINQVCPLIFPEMKNVLKECGNTISNQTACCGEMKNYVTQLQDQSFVTNLQAFHCAYSLAANLQKDNVSTNVYDICRVKLKDFSLQDSGCLFPSLPFDVTYDESSGIGFKCDLNDNVAAPWPSSKGYSASPSSNSSTVLPALPKAASDQSGLRSTLFISSLLVLNLFI 435
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21690 435 PANTHER GPI-ANCHORED PROTEIN 33 429 IPR040336 GO:0005886(PANTHER)
Pslu1g21690 435 Pfam SPARK 69 218 IPR043891 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21690 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:155829302 Pslu4g08040 Pslu-Chr4:55530094 dispersed