AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21724 ATGGGGTCTGCCTGTTGTGTTGCTGCTAAAGATAGAACTATAACAGATCGATCTGGTAGTGATGTTATGATGAGGAATGATCGGTATTCACCGTCTTGGAGCTTTCGCTGGGATAATCGAGGGCGTGTGGCAGGTGAAGAGTCATCCATGAATTGCTATTCTGATGGTGCTGGTATGAATGATAGGTTGGACAATAAATCTCATACAACTGTAGAAACTGCAAATGCGACAGAAGGCAGTCCTTTGGAAAGTTCACGAAGCCTCACTTGGCATAAGTCTTCGCTTTCTGAAGAAAATGGAATTCCTCAGTCAGGGCCCGTAAATTTTAAGAATCTTCGCGAGGGGAAGGAGTCAAGGGGAACTACTGTATCTTTGGAACTGTCTCCAGCCAAAATGTCAACACCGACACACTCAGTTTCATCCTTTTCGGCATCTCCTTTATCTTCTTCCCGAAGTCAACTCATGCCACTCTCAAGTTTGACTCCATCAAGATGGCCCCGTCGTTCACCTGGTCACCATCTACTACGTCAAGTGTCTGATAGCCGAATCCGAGGCATGATGTCACCCAACTTTTCAATATCTGAAGAGGGTTCACCTTTCATGTACCCTGGGTGGAGCAATAAATCAAACACGGGGTCTCACGGTGGATCTTCAGATGGTTGGTCTAATAGAGATAGATGGTCTTTTGATAGCGAGTCTCTCAGTTTTAGTCGTGATAGAGTTAGCCGATCTAGTGGCAGGGTTTCTTCTTCTCCAGCCATGGACATTCAGACATGTGGTGTTTGCTCTAAGCTTTTAACTGAGAGATCCTCTTGGAGCAGTCAAAAAATTGTGGCCACCAATGGGCTACCAGCTGTTGCGGTTCTGATATGTGGGCATGTATACCATGCAGAGTGTTTGGAAAATATGACACCCGAGGTCAACAAATATGATCCTGCTTGCCCTATTTGTACTTTGGGGGCAAATAAGGTTCTCAAGCTGTCAGAAAAGGCAATGGGAGAATTGGATTTAAAGGGTAAATTCGGCAAGAAATTAAGGAGTCGGGTGGTGGATGGTGGTGATTTAGTTCTGTTTGATCGTTTTACGAATGGCAGAGGTCCAAAGATGGGTTCAAGTTCAAGCATGAAGAGCTCCACAAGTATAGCCAAGCCGTTTTTAAGGAGACATTTCTCTTTTGGCTACAAACCGAACAGATCTTTGCCGGACAACAGTTCTAAGAAAAAAAGATTTTTCTGGTCAAAATCAAGCAAGGAGTGA 1257 44.55 MGSACCVAAKDRTITDRSGSDVMMRNDRYSPSWSFRWDNRGRVAGEESSMNCYSDGAGMNDRLDNKSHTTVETANATEGSPLESSRSLTWHKSSLSEENGIPQSGPVNFKNLREGKESRGTTVSLELSPAKMSTPTHSVSSFSASPLSSSRSQLMPLSSLTPSRWPRRSPGHHLLRQVSDSRIRGMMSPNFSISEEGSPFMYPGWSNKSNTGSHGGSSDGWSNRDRWSFDSESLSFSRDRVSRSSGRVSSSPAMDIQTCGVCSKLLTERSSWSSQKIVATNGLPAVAVLICGHVYHAECLENMTPEVNKYDPACPICTLGANKVLKLSEKAMGELDLKGKFGKKLRSRVVDGGDLVLFDRFTNGRGPKMGSSSSMKSSTSIAKPFLRRHFSFGYKPNRSLPDNSSKKKRFFWSKSSKE 418
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21724 418 MobiDBLite consensus disorder prediction 69 106 - -
Pslu1g21724 418 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 240 319 IPR013083 -
Pslu1g21724 418 ProSiteProfiles Zinc finger RING-type profile. 259 318 IPR001841 -
Pslu1g21724 418 MobiDBLite consensus disorder prediction 121 165 - -
Pslu1g21724 418 PANTHER EXPRESSED PROTEIN 1 321 - -
Pslu1g21724 418 MobiDBLite consensus disorder prediction 395 418 - -
Pslu1g21724 418 SUPERFAMILY RING-U-box 252 319 - -
Pslu1g21724 418 SMART ring-2 259 317 IPR001841 -
Pslu1g21724 418 MobiDBLite consensus disorder prediction 401 418 - -
Pslu1g21724 418 MobiDBLite consensus disorder prediction 69 171 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21724 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
134992 Pslu1g21724 Pslu5g15158
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:156042156 Pslu3g17725 Pslu-Chr3:126019186 dispersed
Pslu Pslu-Chr5:96750169 Pslu1g21724 Pslu-Chr1:156042156 transposed
Pslu Pslu-Chr1:156042156 Pslu5g15158 Pslu-Chr5:110906409 wgd