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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21765 ATGATACGAGCGGTGATTATAATCAATGATCAAGGCAAGCCTCGCCTCGTCAAATTCTACGATTATCAGCCGGTGGAGAAACAACATGAAGTCATTCGGAACATATACGGAGTTTTATGCAGTAGGGCGGAGAATGTGAGCAACTTTGTTCAAGTAGATTCGACTTTTGGACCGGATACCCGACTTGTATACAAAACTTTTGCTACACTATACTTCATTGTCATATTTGATGATTCTGAAAATGAGCTTGCCATTCTAGATCTTATGCAAGTATTTGTGGAGACATTGGACAAGTGTTTCAGTAATGTTTGTGAGCTTGACATTGTGTTCAATTTCAACAAGGTTCATACCATCCTCGATGAGATTATTTTGGGAGGTCAAGTGGTTGAAATGAGTTCTTCTGAAGTTGTGAAAGCAGTAGACGAGATATCCTGGCTCGAGAAGAACCCAAACTCAATCCTTCAAGTTCCAAAATCTATATCTGGTTGGCAGAGACGGTAG 501 40.32 MIRAVIIINDQGKPRLVKFYDYQPVEKQHEVIRNIYGVLCSRAENVSNFVQVDSTFGPDTRLVYKTFATLYFIVIFDDSENELAILDLMQVFVETLDKCFSNVCELDIVFNFNKVHTILDEIILGGQVVEMSSSEVVKAVDEISWLEKNPNSILQVPKSISGWQRR 166
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21765 166 SUPERFAMILY SNARE-like 1 144 IPR011012 -
Pslu1g21765 166 Pfam Clathrin adaptor complex small chain 1 143 IPR022775 -
Pslu1g21765 166 Gene3D - 1 159 - -
Pslu1g21765 166 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Pslu1g21765 166 PIRSF AP-complex-sigma 1 155 IPR016635 GO:0015031(InterPro)
Pslu1g21765 166 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 144 IPR016635 GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER)
Pslu1g21765 166 FunFam AP complex subunit sigma 1 156 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21765 K12399 AP-3 complex subunit sigma
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:156369538 Pslu2g03065 Pslu-Chr2:20908013 dispersed