AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21792 ATGAAACAACGTCCAAAGCTTTGTGCCGGTGTGGGGGAAGTTGTTCAAAGGGCAGGCAGCATGGATCGTCAAAAATCACAATGGCTAGCTATCAAGGGGCAAAATGAAAAAGAATGTGAAGCAGAAGCAGAAGCAGAGGCTGTAATAATAGGGGGAATGGTGTTAGATATTCAAGCCACTCCTGCTATTCCTCCAAACCCTAGAACTACTGTTCCTGGCAAGGTGCGATATGCAGCAGGAGGTGTAGCAAGGAACATTGCTGAGTGTGTATCAAAGCTTGGAACAAAGCCTTTTATGATAAGTGCATTAGGATTGGATACGTCAGGAAATATGTTGTTGGAGTACTGGAAGTCTGCAGGATTATCAATGGAAGGCATCCGAATGGGACATGAGATAGAGACTCCAGTTGTATGCGTTGTTTTTGATACTGATGGTGAATCAGCTGCTGCTGTTGCAAGTGTTGAGTCTGTTGAACGGTTTCTTACACCCAAGTGGATTGTAAATTTTAAGCCTGATATTGCATCTGCTCCTATGGTAATGGTTGATGCAAACTTAAGTTCATCGGCTCTTGAAGCATCTTGTCAGTTGGCAGCAGAGGTTGGTACGCCAGTGTGGTTTGAGCCTGTATCTGTAGCAAAGTCAAGAAGAGTTGTTTCAGTTGCCAAGTATATAACCTTTACTTCACCTAATGAAGACGAGCTAATTGCCATGGCCAATGCTCTATCTCGCAAAGACACATTTGCTCCAATTCAAAAGGATAGCAGTACAATAGCATCTCTATTTCAACAACTAAAGCCAGCAATCTGGATTTTGCTTGAAAAAGGCATCAAAGTGGTTGTGCTAACTCTCGGGTCAAAAGGAGTGCTGTTATGCTCTAAAGGACGTCTCGACTTTCAACATATTGGACCAAATAGAAACAATAAGTCACATGATATAGGCAAAATGTTGCATGAAACCATAAGTCAACTCTGTCCATCTGACCGATTTTTTAATGCCTTGAGGCTTGAAGAGAGCTCTAGTAGCAGCCCATATGTGGTGCATTTTCCAGCTGTATCATCTGCTTCAGTAGTGAGGCTTACAGGAGCTGGTGATTGTCTAGTTGGTGGCTCGATTGCTTCCATTTGTGCAGGTTTAGATGTAATGCAGAGTATTGCAGTTGGAATTGCAGCTGCTAAAGCTACTGTTGAGGCGGAGACAAACGTACCCATCAAATATAGTTTGGATCAAATTGCAGCTGATGCAAGATCGGTGTACTTGGGTGCCAAGGTTGTTTTCGTTCAGTCGATGTTATAA 1293 43.0 MKQRPKLCAGVGEVVQRAGSMDRQKSQWLAIKGQNEKECEAEAEAEAVIIGGMVLDIQATPAIPPNPRTTVPGKVRYAAGGVARNIAECVSKLGTKPFMISALGLDTSGNMLLEYWKSAGLSMEGIRMGHEIETPVVCVVFDTDGESAAAVASVESVERFLTPKWIVNFKPDIASAPMVMVDANLSSSALEASCQLAAEVGTPVWFEPVSVAKSRRVVSVAKYITFTSPNEDELIAMANALSRKDTFAPIQKDSSTIASLFQQLKPAIWILLEKGIKVVVLTLGSKGVLLCSKGRLDFQHIGPNRNNKSHDIGKMLHETISQLCPSDRFFNALRLEESSSSSPYVVHFPAVSSASVVRLTGAGDCLVGGSIASICAGLDVMQSIAVGIAAAKATVEAETNVPIKYSLDQIAADARSVYLGAKVVFVQSML 430
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21792 430 Pfam pfkB family carbohydrate kinase 345 397 IPR011611 -
Pslu1g21792 430 Pfam pfkB family carbohydrate kinase 46 294 IPR011611 -
Pslu1g21792 430 Gene3D - 41 421 IPR029056 -
Pslu1g21792 430 CDD YeiC-kinase-like 48 396 - -
Pslu1g21792 430 PRINTS Ribokinase signature 49 70 IPR002139 GO:0016301(InterPro)
Pslu1g21792 430 PRINTS Ribokinase signature 279 290 IPR002139 GO:0016301(InterPro)
Pslu1g21792 430 PRINTS Ribokinase signature 219 234 IPR002139 GO:0016301(InterPro)
Pslu1g21792 430 PANTHER ZGC:136858 42 412 - -
Pslu1g21792 430 SUPERFAMILY Ribokinase-like 47 397 IPR029056 -
Pslu1g21792 430 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 80 104 IPR002173 GO:0016301(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21792 - -