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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21807 ATGGATGACGTTCCAGGATCCATGGGGACTAGTGCAGGGTTCGCTCTGAGGCTCGGTCAGACCATCTTCTCATCTGCTTCTCTTCTCTTTATGTCATTCGGAGTTCAGTTTTACAGCTATACGTCCTTCTGCTTCTTGGTGACAATTATGGGATTGGTAATCCCATGGAGCTTCACATTAGCACTACTTGATGGATACTCTGTTATGGTAACACGCCCAATTCGACAAAAGGGGATATTGCTCATCATAGTCATAGGAGATTGGGTGTTATCGATGCTTACACTAGGTGCCGCCTCTTCTGCCGCTAGTGTGGTTGATATCTTGCTGACAGCAGATGAATCTGTCTGCTCTCCTAAAGTCTGCAGCCGATATCTGCTTTCCACCATATTTGCTTTCTTGTCATGGTTCCTGTCTATGGCTTCTTCTCTATTCAATCTGTGGCTTCTTCCATCATTGTGA 459 45.53 MDDVPGSMGTSAGFALRLGQTIFSSASLLFMSFGVQFYSYTSFCFLVTIMGLVIPWSFTLALLDGYSVMVTRPIRQKGILLIIVIGDWVLSMLTLGAASSAASVVDILLTADESVCSPKVCSRYLLSTIFAFLSWFLSMASSLFNLWLLPSL 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21807 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 GO:0016020(PANTHER)
Pslu1g21807 152 Pfam Casparian strip membrane protein domain 8 137 IPR006702 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21807 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:156618474 Pslu2g02557 Pslu-Chr2:16814590 dispersed
Pslu Pslu-Chr1:156618474 Pslu6g02853 Pslu-Chr6:19078386 transposed