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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21830 ATGTCTCCTGAACTAAGTTTAGATATCAAATCAATTTTCATCCCAAAAACAATCACTCAGTTTCTTGAAGAACTATCCAAAATCGATAACGTAATGGAGAAGATACTAATAGTTGATAAATTTGTTAACAGATTAGTATCCGAAACAAGAAAAATCGAAGCTTTTGAACTTGAAGTCCCTCTAGCCATGCTCCTCATCAATGATGCAATAGTGGCATTGAAAGAGGAATCAAAGGTGTTAAAGAAATCTTTAAATGTCGAACCGGTACTTGAAGAATTTATGCCACTCAAGAACAGTTGTGATGCTATTGACGATGTAAAAGTTGAAATCGTTATGAATGAAAAGGATAATGGTGATAAGAAGAATTGGTTGAGCTCTACACATCTTTGGAATGCTAATGAGAATCTTAATCAGAAATCAAATTCAGTACCAAAAATGATTATAAAGAAAACTAAAGAAGACGATGTAAGGAGAGCAATTTTTAGCCCTGAGATCAATGGTAACAGTCGATTGATTCCATTTTCTAAGCCAAATTTTCAATCAAATATACAAACTGGCAACCCTGTTCATGCACCATTACGACAACAGACGTCTAGGAAACAAAGGAGATGTTGGTCCGCTGAGTTGCATAGACGATTTGTCAGTGCCCTGCAACAACTTGGAGGTTCACAAGTAGCCACTCCTAAGCAGATTCGAGAGCTTATGCAAGTAGATGGTCTCACCAGCGACGAAGTGAAGAGCCATTTACAGAAATACAGGCTTCATACACGAAGACTTCCATCTTTAAACACAACTCAATCTAATGGTGTTGTGGTAGGGGGATTATGGATGTCTAAATGTAGCAATTCTCAATCGAGTTCGCCTGATGGACCCCTCCCGACTGGTGGCAACAACATGGATGATGAAGAAGATGATAAATCCGATAACAATTGGTACCATTGCGTTAGTTGA 951 37.96 MSPELSLDIKSIFIPKTITQFLEELSKIDNVMEKILIVDKFVNRLVSETRKIEAFELEVPLAMLLINDAIVALKEESKVLKKSLNVEPVLEEFMPLKNSCDAIDDVKVEIVMNEKDNGDKKNWLSSTHLWNANENLNQKSNSVPKMIIKKTKEDDVRRAIFSPEINGNSRLIPFSKPNFQSNIQTGNPVHAPLRQQTSRKQRRCWSAELHRRFVSALQQLGGSQVATPKQIRELMQVDGLTSDEVKSHLQKYRLHTRRLPSLNTTQSNGVVVGGLWMSKCSNSQSSSPDGPLPTGGNNMDDEEDDKSDNNWYHCVS 316
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21830 316 SUPERFAMILY Homeodomain-like 197 258 IPR009057 -
Pslu1g21830 316 FunFam Myb family transcription factor 199 257 - -
Pslu1g21830 316 Pfam Myb-like DNA-binding domain 202 253 IPR001005 -
Pslu1g21830 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 308 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Pslu1g21830 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 255 IPR006447 GO:0003677(InterPro)
Pslu1g21830 316 Gene3D - 199 257 - -
Pslu1g21830 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 257 IPR017930 -
Pslu1g21830 316 MobiDBLite consensus disorder prediction 281 316 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21830 K28176 GARP family transcription factor, NIGT1 subfamily
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Event-related genes

Select Gene_1 Gene_2 Event_name
135016 Pslu1g21830 Pslu3g16647
135017 Pslu1g21830 Pslu5g15052
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:156755209 Pslu3g17857 Pslu-Chr3:126866689 dispersed
Pslu Pslu-Chr1:156755209 Pslu3g16647 Pslu-Chr3:119328165 wgd
Pslu Pslu-Chr1:156755209 Pslu5g15052 Pslu-Chr5:110314481 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pslu1g00641 . 36 417 G2-like Transcription Factor family AT2G20570 51.456 1.03e-104 315.0
Pslu1g02536 ACH 196 387 G2-like Transcription Factor family AT1G32240 57.426 4.03e-60 196.0
Pslu1g04288 . 1 285 G2-like Transcription Factor family AT4G13640 64.883 1.82e-125 357.0
Pslu1g04449 . 4 270 G2-like Transcription Factor family AT2G01060 67.537 7.19e-109 315.0
Pslu1g04572 . 21 82 G2-like Transcription Factor family AT2G02060 70.968 3.69e-28 103.0
Pslu1g08874 . 47 172 G2-like Transcription Factor family AT2G40260 64.286 8.49e-41 146.0
Pslu1g12641 . 1 266 G2-like Transcription Factor family AT5G05090 54.895 1.16e-73 224.0
Pslu1g21830 ACH 4 314 G2-like Transcription Factor family AT2G03500 37.092 1.05e-51 174.0
Pslu2g01483 . 2 259 G2-like Transcription Factor family AT5G42630 39.731 1.80e-45 162.0
Pslu2g03732 . 1 400 G2-like Transcription Factor family AT5G16560 45.011 1.30e-80 252.0
Pslu2g16650 . 1 245 G2-like Transcription Factor family AT5G45580 53.282 1.25e-76 232.0
Pslu2g16694 ACH 1 386 G2-like Transcription Factor family AT1G32240 49.395 7.63e-90 274.0
Pslu3g14966 ACH 174 387 G2-like Transcription Factor family AT1G32240 55.357 1.40e-59 194.0
Pslu3g15882 . 14 163 G2-like Transcription Factor family AT3G12730 71.333 5.27e-71 222.0
Pslu3g16647 ACH 1 322 G2-like Transcription Factor family AT2G03500 37.612 4.52e-57 190.0
Pslu3g17857 . 1 432 G2-like Transcription Factor family AT2G03500 47.485 1.60e-120 357.0
Pslu4g00536 ACH 45 345 G2-like Transcription Factor family AT2G40260 39.61 2.76e-47 164.0
Pslu4g03237 . 30 401 G2-like Transcription Factor family AT5G18240 48.312 4.86e-99 296.0
Pslu4g03238 . 18 401 G2-like Transcription Factor family AT5G18240 49.227 1.88e-108 320.0
Pslu4g03695 ACH 10 326 G2-like Transcription Factor family AT1G25550 52.707 6.44e-102 303.0
Pslu4g03918 . 3 82 G2-like Transcription Factor family AT2G02060 68.75 1.99e-31 115.0
Pslu4g06222 . 5 110 G2-like Transcription Factor family AT2G42660 54.386 1.62e-30 115.0
Pslu4g09094 . 1 257 G2-like Transcription Factor family AT2G01060 66.543 2.98e-112 323.0
Pslu4g16438 . 21 223 G2-like Transcription Factor family AT1G69580 58.128 3.32e-74 229.0
Pslu5g00259 . 15 144 G2-like Transcription Factor family AT2G01060 55.385 4.15e-51 167.0
Pslu5g03189 . 56 355 G2-like Transcription Factor family AT4G28610 51.863 1.28e-93 284.0
Pslu5g09272 . 1 223 G2-like Transcription Factor family AT3G46640 60.759 9.99e-85 257.0
Pslu5g10826 . 76 137 G2-like Transcription Factor family AT1G79430 53.226 3.06e-13 61.6
Pslu5g12197 . 1 79 G2-like Transcription Factor family AT1G14600 72.152 3.07e-32 117.0
Pslu5g12511 ACH 2 311 G2-like Transcription Factor family AT1G25550 43.865 2.20e-77 238.0
Pslu5g15052 ACH 4 323 G2-like Transcription Factor family AT2G03500 37.845 2.33e-55 187.0
Pslu6g00946 ACH 44 170 G2-like Transcription Factor family AT2G40260 65.116 5.65e-47 162.0
Pslu6g01226 . 142 205 G2-like Transcription Factor family AT5G44190 56.25 2.57e-17 80.5
Pslu6g01906 . 71 392 G2-like Transcription Factor family AT3G04450 45.21 6.92e-77 243.0
Pslu6g13707 . 2 259 G2-like Transcription Factor family AT5G42630 41.009 6.54e-54 175.0
Pslu7g01919 . 1 387 G2-like Transcription Factor family AT3G04030 51.923 8.14e-121 353.0
Pslu7g04539 . 1 275 G2-like Transcription Factor family AT3G24120 64.158 4.92e-118 338.0
Pslu7g11027 . 15 146 G2-like Transcription Factor family AT2G01060 57.576 2.45e-51 167.0
Pslu7g11810 . 1 367 G2-like Transcription Factor family AT4G28610 46.954 2.75e-101 305.0
Pslu7g12247 . 74 174 G2-like Transcription Factor family AT2G40260 64.762 7.62e-36 132.0
Pslu7g12367 . 1 219 G2-like Transcription Factor family AT3G46640 50.638 2.99e-62 197.0
Pslu7g12734 . 174 324 G2-like Transcription Factor family AT5G06800 66.225 1.37e-63 206.0
Pslu7g12736 . 217 314 G2-like Transcription Factor family AT5G06800 65.306 3.63e-33 122.0
Pslu7g13146 . 1 335 G2-like Transcription Factor family AT3G10760 53.448 1.04e-83 253.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pslu Myb_DNA-binding 7.9e-07 CL0123 TF GARP-G2-like