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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21853 ATGTTTTCCGTTTCTCTCTCATCATTCATATCAATTTCTGAACAAATCCCACTAGAAATTCAGGGCTACTTACGAATACACAAAGATGGCCGATCCGAAAGATTGCGCGGACCTAGAACCATCTCCGCTGGAACCGACCCCTTAACTGGTGTCCAATCCAAAGACGCTGTCATCTCACACGAAACCAACGTTTGTGTAAGAATTTACATTCCTAAGACCGCCACACGAAATCATAAACTCCCAACAGTCATCTACTATCATGGAGGTGGCTTCATAATAGAGTCTGCCACGTCATCCACATACCACCCAACACTTAACTTAATCACAGCTGAATCTAACGTGATTGCTATTTCAGTTGACTACAGGTTGGCACCAGAGTATCCCATCCCGATTGCATTTGAAGATTCATGGGAAGCGATTAAGTGGGTGGCTAAACATGATAAAAGTAATGGTCCTGACCCATGGTTAAATGACTACGCTGATCTTCGTAATATGTTTCTTGTTGGAGATAGTGCGGGGGCCACCATCGCCCATAACATGGCTATCCGGGTCGGGTTAAACCTATATCAAGTTAGTGAAATCGAGGTCAAGGGTCTAATTTTGCTGCATCCTTTTTTTGAAGGATATAAGCCAATTAAGTCCAAGTCACATTGTGAGTTTGAAGAGATGAAGGATCGCATGTGGAAGTTGACTAACCCAATGGGTCTCAGCCGGGCTGACCCATTGTTTGACCCAGGTATGGACCCGAATGTTTCGGGTTTGAGGTGTTGTAAGGTATTTGTGTGTATTGGTGAGAAGGATAAAATGAGAGGTATGGGTTTGTATTACAAGGAGGTGATGGAGAAGTGTGGATGGAATGGAAGAGTGGAGTTTATGGAGAGTAAAAGGGAAGGGCATGTGTTCTTTTTGTTTAATACTTCATGTAAAAATGCTTGTACGTTGCGCAAGAGGATTTGTACCTTCATCAACCCGATTCGTAGCAAAACCTAA 990 43.23 MFSVSLSSFISISEQIPLEIQGYLRIHKDGRSERLRGPRTISAGTDPLTGVQSKDAVISHETNVCVRIYIPKTATRNHKLPTVIYYHGGGFIIESATSSTYHPTLNLITAESNVIAISVDYRLAPEYPIPIAFEDSWEAIKWVAKHDKSNGPDPWLNDYADLRNMFLVGDSAGATIAHNMAIRVGLNLYQVSEIEVKGLILLHPFFEGYKPIKSKSHCEFEEMKDRMWKLTNPMGLSRADPLFDPGMDPNVSGLRCCKVFVCIGEKDKMRGMGLYYKEVMEKCGWNGRVEFMESKREGHVFFLFNTSCKNACTLRKRICTFINPIRSKT 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21853 329 Gene3D alpha-beta hydrolase 20 323 IPR029058 -
Pslu1g21853 329 PANTHER ARYLACETAMIDE DEACETYLASE 22 316 IPR050466 -
Pslu1g21853 329 Pfam alpha-beta hydrolase fold 83 302 IPR013094 GO:0016787(InterPro)
Pslu1g21853 329 SUPERFAMILY alpha-beta-Hydrolases 48 324 IPR029058 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21853 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
135022 Pslu1g21853 Pslu5g15042
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:156905468 Pslu1g21868 Pslu-Chr1:156968951 dispersed
Pslu Pslu-Chr1:156905468 Pslu1g21854 Pslu-Chr1:156923912 tandem
Pslu Pslu-Chr3:5218793 Pslu1g21853 Pslu-Chr1:156905468 transposed
Pslu Pslu-Chr3:16962820 Pslu1g21853 Pslu-Chr1:156905468 transposed
Pslu Pslu-Chr1:156905468 Pslu3g16655 Pslu-Chr3:119372414 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pslu1g01331 . 30 118 Carbohydrate Esterase gene family AT3G16970 32.258 2.55e-08 47.8
Pslu1g01404 . 459 695 Carbohydrate Esterase gene family AT5G36210 26.275 8.24e-21 95.9
Pslu1g01413 . 493 695 Carbohydrate Esterase gene family AT5G36210 26.267 5.59e-16 80.5
Pslu1g01414 . 65 389 Carbohydrate Esterase gene family AT1G05310 70.154 0.0 507.0
Pslu1g01842 . 25 361 Carbohydrate Esterase gene family AT5G47500 74.481 0.0 532.0
Pslu1g01938 . 188 566 Carbohydrate Esterase gene family AT5G49180 51.309 4.93e-134 407.0
Pslu1g03151 . 69 729 Carbohydrate Esterase gene family AT5G36210 68.271 0.0 960.0
Pslu1g03222 . 28 317 Carbohydrate Esterase gene family AT5G16080 31.879 7.37e-49 164.0
Pslu1g03228 . 128 161 Carbohydrate Esterase gene family AT5G16080 52.941 2.15e-06 42.7
Pslu1g03229 . 209 322 Carbohydrate Esterase gene family AT3G63010 35.965 7.26e-17 73.6
Pslu1g04285 . 32 333 Carbohydrate Esterase gene family AT2G19150 41.639 2.66e-80 247.0
Pslu1g06601 . 30 380 Carbohydrate Esterase gene family AT5G55590 63.408 1.00e-152 433.0
Pslu1g06992 . 9 543 Carbohydrate Esterase gene family AT3G05620 65.314 0.0 718.0
Pslu1g06993 . 8 570 Carbohydrate Esterase gene family AT3G05610 47.803 0.0 592.0
Pslu1g07122 ACH 3 416 Carbohydrate Esterase gene family AT5G26670 68.106 0.0 605.0
Pslu1g07701 . 16 352 Carbohydrate Esterase gene family AT3G63010 38.857 6.07e-74 231.0
Pslu1g11491 . 1 612 Carbohydrate Esterase gene family AT2G26450 46.067 0.0 560.0
Pslu1g11508 . 58 211 Carbohydrate Esterase gene family AT3G05610 28.846 1.49e-14 68.9
Pslu1g12416 . 6 282 Carbohydrate Esterase gene family AT2G41530 81.362 6.04e-176 485.0
Pslu1g19225 . 47 530 Carbohydrate Esterase gene family AT4G02300 51.534 3.74e-177 510.0
Pslu1g19652 . 1 588 Carbohydrate Esterase gene family AT2G47030 37.073 1.80e-132 398.0
Pslu1g20341 . 10 511 Carbohydrate Esterase gene family AT2G45220 67.505 0.0 716.0
Pslu1g20364 . 11 511 Carbohydrate Esterase gene family AT2G45220 66.926 0.0 712.0
Pslu1g20368 . 11 511 Carbohydrate Esterase gene family AT2G45220 66.926 0.0 713.0
Pslu1g20389 . 39 224 Carbohydrate Esterase gene family AT5G53370 25.128 2.14e-10 57.4
Pslu1g20390 . 79 225 Carbohydrate Esterase gene family AT5G53370 26.994 9.75e-09 52.8
Pslu1g20400 . 56 220 Carbohydrate Esterase gene family AT1G53830 24.713 4.89e-08 50.4
Pslu1g20401 . 37 224 Carbohydrate Esterase gene family AT5G53370 24.623 3.09e-09 54.3
Pslu1g20403 . 75 224 Carbohydrate Esterase gene family AT5G53370 26.994 3.10e-10 57.0
Pslu1g20615 . 22 256 Carbohydrate Esterase gene family AT1G68620 38.866 1.53e-46 159.0
Pslu1g20621 . 35 257 Carbohydrate Esterase gene family AT1G68620 37.662 4.26e-47 160.0
Pslu1g20624 . 124 305 Carbohydrate Esterase gene family AT5G16080 33.684 3.55e-30 114.0
Pslu1g20628 . 40 305 Carbohydrate Esterase gene family AT5G16080 34.286 1.12e-46 159.0
Pslu1g21853 ACH 1 320 Carbohydrate Esterase gene family AT3G48690 42.188 1.70e-75 233.0
Pslu1g21854 . 66 284 Carbohydrate Esterase gene family AT3G48690 45.205 2.60e-58 189.0
Pslu1g21863 . 3 320 Carbohydrate Esterase gene family AT3G48690 45.283 2.25e-81 248.0
Pslu1g21867 . 172 313 Carbohydrate Esterase gene family AT1G19190 27.891 6.87e-10 53.9
Pslu1g21868 ACH 12 321 Carbohydrate Esterase gene family AT3G48690 46.129 3.45e-90 271.0
Pslu1g21869 ACH 13 314 Carbohydrate Esterase gene family AT1G19190 43.421 8.73e-85 256.0
Pslu2g01139 . 2 247 Carbohydrate Esterase gene family AT1G53840 33.202 3.00e-36 133.0
Pslu2g01140 . 64 232 Carbohydrate Esterase gene family AT1G53840 34.302 1.33e-22 94.4
Pslu2g02054 . 30 308 Carbohydrate Esterase gene family AT1G68620 39.86 6.27e-67 211.0
Pslu2g02389 . 59 362 Carbohydrate Esterase gene family AT5G47500 36.943 1.65e-70 221.0
Pslu2g02516 ACH 32 422 Carbohydrate Esterase gene family AT3G02410 71.355 0.0 587.0
Pslu2g04314 . 5 561 Carbohydrate Esterase gene family AT3G10710 54.225 0.0 625.0
Pslu2g04323 . 2 561 Carbohydrate Esterase gene family AT3G10710 54.145 0.0 646.0
Pslu2g07498 . 145 247 Carbohydrate Esterase gene family AT1G53840 28.846 2.82e-11 56.2
Pslu2g10298 . 30 260 Carbohydrate Esterase gene family AT1G24793 56.71 2.42e-93 276.0
Pslu2g15456 . 1 446 Carbohydrate Esterase gene family AT5G14310 60.491 0.0 530.0
Pslu2g16117 . 12 566 Carbohydrate Esterase gene family AT3G05610 48.925 0.0 575.0
Pslu2g16294 . 236 554 Carbohydrate Esterase gene family AT1G23200 53.963 4.84e-126 374.0
Pslu2g16384 . 4 381 Carbohydrate Esterase gene family AT4G19420 52.713 7.94e-145 415.0
Pslu2g16388 . 3 375 Carbohydrate Esterase gene family AT4G19420 48.813 1.73e-143 412.0
Pslu2g17744 ACH 57 216 Carbohydrate Esterase gene family AT1G53830 27.778 1.15e-18 81.6
Pslu3g00054 . 54 592 Carbohydrate Esterase gene family AT3G14310 56.56 0.0 597.0
Pslu3g00055 . 46 592 Carbohydrate Esterase gene family AT3G14310 56.373 0.0 602.0
Pslu3g00056 . 45 592 Carbohydrate Esterase gene family AT3G14310 52.043 0.0 560.0
Pslu3g00712 . 55 322 Carbohydrate Esterase gene family AT5G16080 38.489 1.34e-50 169.0
Pslu3g00713 . 36 285 Carbohydrate Esterase gene family AT1G68620 41.634 2.47e-52 173.0
Pslu3g00723 . 36 341 Carbohydrate Esterase gene family AT5G16080 36.42 1.09e-52 175.0
Pslu3g02539 . 1 325 Carbohydrate Esterase gene family AT3G48700 44.073 2.56e-94 282.0
Pslu3g08626 . 176 284 Carbohydrate Esterase gene family AT1G05310 38.182 4.62e-21 86.7
Pslu3g12136 . 8 361 Carbohydrate Esterase gene family AT1G69940 48.739 5.01e-132 380.0
Pslu3g12283 . 1 359 Carbohydrate Esterase gene family AT5G61570 49.194 2.06e-109 322.0
Pslu3g12418 . 23 536 Carbohydrate Esterase gene family AT5G51490 50.664 2.14e-179 513.0
Pslu3g12421 ACH 51 218 Carbohydrate Esterase gene family AT1G53830 34.32 6.16e-25 99.4
Pslu3g12422 ACH 51 218 Carbohydrate Esterase gene family AT1G53830 32.544 3.55e-21 88.6
Pslu3g12423 ACH 52 219 Carbohydrate Esterase gene family AT1G53830 25.882 1.32e-11 60.8
Pslu3g12818 . 42 174 Carbohydrate Esterase gene family AT1G25141 28.261 6.92e-06 45.1
Pslu3g12992 . 3 586 Carbohydrate Esterase gene family AT5G53370 63.289 0.0 775.0
Pslu3g14368 . 66 216 Carbohydrate Esterase gene family AT1G53830 28.105 6.09e-14 67.4
Pslu3g14372 ACH 50 213 Carbohydrate Esterase gene family AT3G14310 27.381 6.93e-19 82.0
Pslu3g14373 . 62 232 Carbohydrate Esterase gene family AT1G53830 31.073 5.90e-16 73.6
Pslu3g14376 . 126 213 Carbohydrate Esterase gene family AT3G14310 32.222 1.05e-09 55.1
Pslu3g14381 . 52 213 Carbohydrate Esterase gene family AT3G14310 25.0 1.26e-14 69.7
Pslu3g15136 . 6 389 Carbohydrate Esterase gene family AT4G19420 62.857 0.0 534.0
Pslu3g15137 . 6 389 Carbohydrate Esterase gene family AT4G19420 63.212 0.0 551.0
Pslu3g15493 . 1 375 Carbohydrate Esterase gene family AT4G19420 55.118 1.83e-160 454.0
Pslu3g15494 . 4 374 Carbohydrate Esterase gene family AT4G19410 52.406 2.05e-150 430.0
Pslu3g16166 . 13 271 Carbohydrate Esterase gene family AT3G48690 44.788 1.94e-70 219.0
Pslu3g16655 ACH 3 325 Carbohydrate Esterase gene family AT3G48700 39.628 7.83e-78 239.0
Pslu3g17126 ACH 45 415 Carbohydrate Esterase gene family AT3G05910 69.892 0.0 582.0
Pslu3g17200 . 11 315 Carbohydrate Esterase gene family AT1G19190 40.252 1.83e-76 235.0
Pslu4g00054 . 420 710 Carbohydrate Esterase gene family AT5G36210 23.203 7.77e-08 53.9
Pslu4g00055 . 1 597 Carbohydrate Esterase gene family AT3G49220 62.314 0.0 758.0
Pslu4g00144 . 8 408 Carbohydrate Esterase gene family AT5G23870 64.02 0.0 552.0
Pslu4g00332 . 8 511 Carbohydrate Esterase gene family AT2G45220 40.038 9.73e-128 380.0
Pslu4g00333 . 61 511 Carbohydrate Esterase gene family AT2G45220 41.97 4.64e-121 362.0
Pslu4g00334 . 11 511 Carbohydrate Esterase gene family AT2G45220 61.886 0.0 657.0
Pslu4g00338 . 52 221 Carbohydrate Esterase gene family AT1G53830 27.326 7.16e-18 79.0
Pslu4g00343 ACH 75 221 Carbohydrate Esterase gene family AT5G53370 26.316 4.45e-13 65.5
Pslu4g00344 ACH 59 217 Carbohydrate Esterase gene family AT3G14310 32.317 3.54e-19 83.2
Pslu4g00346 . 82 594 Carbohydrate Esterase gene family AT3G47400 53.307 0.0 556.0
Pslu4g00390 . 1 359 Carbohydrate Esterase gene family AT5G61570 50.267 2.34e-114 335.0
Pslu4g01162 . 51 545 Carbohydrate Esterase gene family AT2G26440 56.0 0.0 528.0
Pslu4g02052 ACH 40 422 Carbohydrate Esterase gene family AT3G02410 71.094 0.0 561.0
Pslu4g02352 . 1 342 Carbohydrate Esterase gene family AT5G16080 52.874 1.36e-115 336.0
Pslu4g02992 . 1 341 Carbohydrate Esterase gene family AT3G05120 75.575 0.0 539.0
Pslu4g03061 . 44 546 Carbohydrate Esterase gene family AT5G09760 63.439 0.0 657.0
Pslu4g03062 . 45 546 Carbohydrate Esterase gene family AT5G09760 64.881 0.0 682.0
Pslu4g03404 ACH 34 223 Carbohydrate Esterase gene family AT5G53370 29.798 2.04e-18 80.9
Pslu4g04377 . 23 307 Carbohydrate Esterase gene family AT1G68620 36.093 2.69e-57 187.0
Pslu4g05759 . 27 137 Carbohydrate Esterase gene family AT3G16970 27.826 1.37e-06 43.5
Pslu5g01148 . 1 595 Carbohydrate Esterase gene family AT2G47040 33.384 2.49e-107 334.0
Pslu5g01429 . 34 518 Carbohydrate Esterase gene family AT4G02320 52.823 0.0 536.0
Pslu5g01452 . 11 571 Carbohydrate Esterase gene family AT4G02330 56.94 0.0 647.0
Pslu5g01509 . 58 211 Carbohydrate Esterase gene family AT3G05610 28.931 5.76e-18 79.3
Pslu5g01929 ACH 1 343 Carbohydrate Esterase gene family AT3G63010 72.832 0.0 530.0
Pslu5g02886 . 42 118 Carbohydrate Esterase gene family AT3G16970 30.233 1.68e-07 45.8
Pslu5g02934 . 42 118 Carbohydrate Esterase gene family AT3G16970 31.395 4.60e-08 47.8
Pslu5g12472 . 36 427 Carbohydrate Esterase gene family AT5G15860 60.553 2.61e-174 495.0
Pslu5g12832 . 38 554 Carbohydrate Esterase gene family AT1G23200 51.607 1.61e-179 514.0
Pslu5g12837 ACH 38 218 Carbohydrate Esterase gene family AT3G14310 25.532 2.86e-12 63.2
Pslu5g13377 . 153 224 Carbohydrate Esterase gene family AT3G02410 58.667 1.05e-19 84.3
Pslu5g13835 . 58 301 Carbohydrate Esterase gene family AT1G68620 28.916 2.59e-26 103.0
Pslu5g13917 . 79 224 Carbohydrate Esterase gene family AT5G53370 26.347 4.59e-09 53.5
Pslu5g13918 . 2 511 Carbohydrate Esterase gene family AT2G45220 59.885 0.0 634.0
Pslu5g13921 . 12 511 Carbohydrate Esterase gene family AT2G45220 65.619 0.0 680.0
Pslu5g14199 . 44 204 Carbohydrate Esterase gene family AT1G25141 28.409 1.40e-09 56.2
Pslu5g14520 . 2 276 Carbohydrate Esterase gene family AT1G19190 40.678 1.56e-65 206.0
Pslu5g14521 . 11 325 Carbohydrate Esterase gene family AT3G48700 37.267 4.15e-59 190.0
Pslu5g15042 ACH 2 326 Carbohydrate Esterase gene family AT3G48700 41.846 8.78e-79 241.0
Pslu5g15130 . 81 379 Carbohydrate Esterase gene family AT5G55590 43.667 1.08e-81 251.0
Pslu5g15756 . 1 581 Carbohydrate Esterase gene family AT1G53840 61.158 0.0 722.0
Pslu5g15757 . 13 592 Carbohydrate Esterase gene family AT3G14310 58.874 0.0 672.0
Pslu5g15758 . 55 592 Carbohydrate Esterase gene family AT3G14310 65.37 0.0 718.0
Pslu5g15817 . 53 177 Carbohydrate Esterase gene family AT1G25141 24.8 3.60e-07 48.9
Pslu5g15996 . 45 118 Carbohydrate Esterase gene family AT3G16970 30.0 9.37e-08 47.0
Pslu5g16181 ACH 47 199 Carbohydrate Esterase gene family AT1G25141 25.466 9.86e-06 44.7
Pslu5g16603 . 61 357 Carbohydrate Esterase gene family AT5G47500 49.664 2.65e-103 307.0
Pslu5g16640 . 42 118 Carbohydrate Esterase gene family AT3G16970 29.545 7.39e-07 44.3
Pslu5g16641 . 42 118 Carbohydrate Esterase gene family AT3G16970 25.581 1.52e-06 43.5
Pslu5g16804 . 56 592 Carbohydrate Esterase gene family AT3G14310 38.609 8.47e-131 397.0
Pslu6g01253 . 176 321 Carbohydrate Esterase gene family AT5G16080 34.211 1.93e-16 75.1
Pslu6g01254 . 174 286 Carbohydrate Esterase gene family AT1G68620 38.462 3.79e-16 72.4
Pslu6g01255 . 141 218 Carbohydrate Esterase gene family AT3G27320 38.462 1.87e-11 57.0
Pslu6g01296 . 31 536 Carbohydrate Esterase gene family AT5G51490 49.903 0.0 526.0
Pslu6g01433 . 8 359 Carbohydrate Esterase gene family AT5G61570 48.864 3.36e-104 308.0
Pslu6g01546 . 24 332 Carbohydrate Esterase gene family AT1G68620 34.862 1.12e-52 174.0
Pslu6g04783 . 1 446 Carbohydrate Esterase gene family AT5G14310 68.467 0.0 635.0
Pslu6g15183 . 42 118 Carbohydrate Esterase gene family AT3G16970 26.19 1.54e-06 43.5
Pslu6g16198 . 1 581 Carbohydrate Esterase gene family AT1G53840 53.638 0.0 622.0
Pslu6g16199 . 10 592 Carbohydrate Esterase gene family AT3G14310 64.081 0.0 739.0
Pslu6g16218 . 71 133 Carbohydrate Esterase gene family AT3G14320 40.299 7.02e-12 58.9
Pslu7g00035 . 28 525 Carbohydrate Esterase gene family AT4G33220 62.6 0.0 655.0
Pslu7g00108 ACH 59 357 Carbohydrate Esterase gene family AT5G47500 39.604 5.29e-79 244.0
Pslu7g01034 . 91 388 Carbohydrate Esterase gene family AT1G05310 55.369 1.07e-123 361.0
Pslu7g01040 . 91 388 Carbohydrate Esterase gene family AT1G05310 49.664 1.09e-106 317.0
Pslu7g01408 . 68 729 Carbohydrate Esterase gene family AT5G36210 72.823 0.0 1025.0
Pslu7g07957 . 18 307 Carbohydrate Esterase gene family AT1G68620 32.039 1.06e-48 164.0
Pslu7g10180 . 41 118 Carbohydrate Esterase gene family AT3G16970 32.53 1.47e-07 46.2
Pslu7g11336 . 6 571 Carbohydrate Esterase gene family AT4G02330 60.211 0.0 698.0
Pslu7g11453 ACH 1 343 Carbohydrate Esterase gene family AT3G63010 71.839 0.0 525.0
Pslu7g13181 . 9 427 Carbohydrate Esterase gene family AT3G09410 59.762 0.0 535.0