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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21876 ATGGATTCCAACAAGCAAACCTTTGTGGAACAAGATTCAGAGATGAAGCAAAATCTGACATCTGACAATAAGAAAAAGAGGAAGAGGAGTTCTAAAGAGCCTGGGGAATCTAAATCAAAAGATAAACAGATTATGTCAGATAAGCCAAAAAAAGCTTCAGGTAAAGGAAAAAGAACGAGGTTATGTGACATATATAATGATGTTGAAGATCTATTTATGTGTTTGGAGCGGGCATCGTTTCTTAAACAACGTCTAGATAAGGAGATACCGAAGTTTGGCAAGTGTATGCTCCCGTCAAATGTTCTGTACAGTTTTTGGTTGATTTTACCAAATAAATTTTGTGTTATGCATTTGCCTGATCACGACACAACGATCACTCTCGTGGATGAGTCAGGAAAGGAGTTTAAGACGAATTTTCTAAAGGCTAGGCACGGTTTAAGTGCTGGGTGGAGGGGATTCACCAATGCACAAAGGTTGCTACAGGGTGATATTCTGTTTTTCTGTCTTGTTGAACCATGCAAACTACAGGTTAATATAGTAAGAAGATATGGTATAGAAGCGATTGAAGCAGCTGTTTGTTTAATGGAAATGCGTCCCCGTTCAAAAAAGAAAAGATCATCAAATTACTTTGAGAAAGCAGAGGAAGCTAAGAAAGAAAAAATCAAACAAAAAGCTGTTAAGCAAGAAGAGGATTGTGAACTAGAGAACCAAGCACCAGTGCTTTCACAAACAAAGAAAGGCAAGAGAACTCGTAGAATTCCAAAGGGGTTTATAACGAGATTGTTACAAGATAATTCAACTCAAGTGAATGTTGAAGAAGATGACAGGGCATCATGCGTTGACCAGTGCAATAATGGTAGCGATGGTTTGAGCTCGGAAGTTCAAGGCTCGACATCAGAGATGACCAATCAATCACAAACAGATGAGGTTGGATGCTACAAACTAAATCTGGGCTACCATGAGGGCAACATTAATTGTCATTCGACTGCAGAAAGAATTTTTCATTCTTCTACAGTGGCAACATAA 1026 38.6 MDSNKQTFVEQDSEMKQNLTSDNKKKRKRSSKEPGESKSKDKQIMSDKPKKASGKGKRTRLCDIYNDVEDLFMCLERASFLKQRLDKEIPKFGKCMLPSNVLYSFWLILPNKFCVMHLPDHDTTITLVDESGKEFKTNFLKARHGLSAGWRGFTNAQRLLQGDILFFCLVEPCKLQVNIVRRYGIEAIEAAVCLMEMRPRSKKKRSSNYFEKAEEAKKEKIKQKAVKQEEDCELENQAPVLSQTKKGKRTRRIPKGFITRLLQDNSTQVNVEEDDRASCVDQCNNGSDGLSSEVQGSTSEMTNQSQTDEVGCYKLNLGYHEGNINCHSTAERIFHSSTVAT 341
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21876 341 CDD B3-DNA 90 181 IPR003340 GO:0003677(InterPro)
Pslu1g21876 341 MobiDBLite consensus disorder prediction 287 306 - -
Pslu1g21876 341 Coils Coil 210 238 - -
Pslu1g21876 341 SMART B3-2 92 183 IPR003340 GO:0003677(InterPro)
Pslu1g21876 341 ProSiteProfiles B3 DNA-binding domain profile. 92 183 IPR003340 GO:0003677(InterPro)
Pslu1g21876 341 SUPERFAMILY DNA-binding pseudobarrel domain 86 182 IPR015300 -
Pslu1g21876 341 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 22 203 IPR044837 -
Pslu1g21876 341 MobiDBLite consensus disorder prediction 1 16 - -
Pslu1g21876 341 Pfam B3 DNA binding domain 92 182 IPR003340 GO:0003677(InterPro)
Pslu1g21876 341 Gene3D - 75 183 IPR015300 -
Pslu1g21876 341 MobiDBLite consensus disorder prediction 1 55 - -
Pslu1g21876 341 MobiDBLite consensus disorder prediction 17 55 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21876 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:157032745 Pslu1g21876 Pslu-Chr1:157040959 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pslu1g00921 . 5 895 B3 DNA Binding Superfamily AT1G19850 59.136 0.0 970.0
Pslu1g02067 . 168 289 B3 DNA Binding Superfamily AT1G05930 28.0 2.34e-07 48.5
Pslu1g03067 . 12 669 B3 DNA Binding Superfamily AT4G30080 55.848 0.0 686.0
Pslu1g03736 . 2 693 B3 DNA Binding Superfamily AT2G28350 55.493 0.0 678.0
Pslu1g03797 . 62 772 B3 DNA Binding Superfamily AT5G60450 54.348 0.0 738.0
Pslu1g04747 . 15 655 B3 DNA Binding Superfamily AT4G21550 36.364 3.61e-117 367.0
Pslu1g04921 . 1 564 B3 DNA Binding Superfamily AT2G33860 49.414 1.51e-176 512.0
Pslu1g05188 . 1 797 B3 DNA Binding Superfamily AT5G37020 59.237 0.0 851.0
Pslu1g06889 . 267 307 B3 DNA Binding Superfamily AT1G59750 56.098 1.05e-10 55.8
Pslu1g06893 . 184 214 B3 DNA Binding Superfamily AT5G37020 67.742 5.94e-09 51.2
Pslu1g06895 . 181 302 B3 DNA Binding Superfamily AT1G59750 47.541 2.62e-28 111.0
Pslu1g06898 . 6 208 B3 DNA Binding Superfamily AT1G59750 42.512 4.44e-41 148.0
Pslu1g06899 . 3 639 B3 DNA Binding Superfamily AT1G59750 68.3 0.0 877.0
Pslu1g06900 . 22 213 B3 DNA Binding Superfamily AT1G59750 55.729 2.22e-69 228.0
Pslu1g06904 . 16 359 B3 DNA Binding Superfamily AT1G59750 34.637 1.90e-49 173.0
Pslu1g06914 . 22 359 B3 DNA Binding Superfamily AT1G59750 56.805 1.78e-131 394.0
Pslu1g07322 . 103 155 B3 DNA Binding Superfamily AT1G19220 71.698 1.05e-21 85.5
Pslu1g07323 . 159 390 B3 DNA Binding Superfamily AT1G19220 67.089 5.23e-98 306.0
Pslu1g07465 . 178 289 B3 DNA Binding Superfamily AT1G05930 30.0 4.94e-07 49.3
Pslu1g21872 ACH 104 230 B3 DNA Binding Superfamily AT3G19184 53.543 4.15e-41 145.0
Pslu1g21874 ACH 117 222 B3 DNA Binding Superfamily AT3G19184 56.604 5.16e-40 137.0
Pslu1g21876 . 69 199 B3 DNA Binding Superfamily AT5G42700 41.667 3.91e-25 99.4
Pslu2g00656 ACH 224 396 B3 DNA Binding Superfamily AT2G30470 40.678 7.47e-33 126.0
Pslu2g00798 . 1 846 B3 DNA Binding Superfamily AT5G62000 61.072 0.0 1001.0
Pslu2g02569 . 4 147 B3 DNA Binding Superfamily AT5G66980 35.172 7.12e-19 79.7
Pslu2g02655 . 112 222 B3 DNA Binding Superfamily AT3G19184 49.55 3.44e-29 114.0
Pslu2g03410 . 19 119 B3 DNA Binding Superfamily AT3G17010 33.333 8.19e-09 50.1
Pslu2g03631 . 1 802 B3 DNA Binding Superfamily AT5G37020 65.483 0.0 989.0
Pslu2g08694 . 25 188 B3 DNA Binding Superfamily AT3G06160 26.347 6.62e-06 45.1
Pslu2g13707 ACH 45 313 B3 DNA Binding Superfamily AT3G26790 40.83 1.54e-56 184.0
Pslu2g17000 . 3 616 B3 DNA Binding Superfamily AT4G23980 59.571 0.0 691.0
Pslu3g00964 . 1 843 B3 DNA Binding Superfamily AT5G62000 59.255 0.0 961.0
Pslu3g02483 . 1 228 B3 DNA Binding Superfamily AT3G19184 55.785 6.10e-76 229.0
Pslu3g02788 . 246 452 B3 DNA Binding Superfamily AT2G30470 36.916 3.61e-38 145.0
Pslu3g09783 . 1 665 B3 DNA Binding Superfamily AT4G30080 54.692 0.0 661.0
Pslu3g14839 . 1 616 B3 DNA Binding Superfamily AT4G23980 59.431 0.0 701.0
Pslu3g16202 ACH 321 426 B3 DNA Binding Superfamily AT4G21550 36.697 2.12e-19 85.5
Pslu3g17361 . 1 453 B3 DNA Binding Superfamily AT1G19220 72.163 0.0 660.0
Pslu3g18113 . 1 479 B3 DNA Binding Superfamily AT1G19220 77.131 0.0 736.0
Pslu4g00942 . 332 669 B3 DNA Binding Superfamily AT5G62000 44.092 1.00e-72 238.0
Pslu4g00976 . 1 670 B3 DNA Binding Superfamily AT4G30080 57.62 0.0 716.0
Pslu4g01546 . 62 772 B3 DNA Binding Superfamily AT5G60450 55.186 0.0 741.0
Pslu4g01573 . 12 659 B3 DNA Binding Superfamily AT4G30080 53.055 0.0 643.0
Pslu4g01700 ACH 74 204 B3 DNA Binding Superfamily AT3G26790 48.529 5.29e-39 137.0
Pslu4g02670 . 1 794 B3 DNA Binding Superfamily AT5G37020 66.346 0.0 1010.0
Pslu4g03242 . 159 289 B3 DNA Binding Superfamily AT1G05930 32.847 2.94e-15 72.8
Pslu4g03827 . 171 289 B3 DNA Binding Superfamily AT1G05930 33.6 6.25e-13 66.6
Pslu4g03833 . 148 289 B3 DNA Binding Superfamily AT1G05930 31.544 1.70e-11 62.0
Pslu4g03835 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.496 1.06e-09 57.0
Pslu4g03836 . 148 289 B3 DNA Binding Superfamily AT1G05930 31.544 9.97e-12 62.4
Pslu4g06654 . 1 485 B3 DNA Binding Superfamily AT2G33860 49.242 9.50e-152 450.0
Pslu4g09944 . 19 119 B3 DNA Binding Superfamily AT3G17010 32.353 1.88e-08 48.9
Pslu4g15780 . 38 299 B3 DNA Binding Superfamily AT3G17010 22.887 6.24e-11 60.5
Pslu4g16210 . 6 375 B3 DNA Binding Superfamily AT4G00260 21.538 1.90e-13 70.5
Pslu4g16271 . 14 112 B3 DNA Binding Superfamily AT4G34400 30.0 4.49e-10 53.1
Pslu4g16279 . 30 125 B3 DNA Binding Superfamily AT3G18960 28.283 4.79e-07 47.0
Pslu4g16290 . 47 162 B3 DNA Binding Superfamily AT1G49475 27.692 1.17e-06 46.6
Pslu5g00753 ACH 1 751 B3 DNA Binding Superfamily AT4G32010 49.375 0.0 719.0
Pslu5g01853 . 62 373 B3 DNA Binding Superfamily AT5G62000 40.752 3.00e-74 243.0
Pslu5g01857 . 62 373 B3 DNA Binding Superfamily AT5G62000 41.066 1.34e-75 246.0
Pslu5g01859 . 45 373 B3 DNA Binding Superfamily AT5G62000 40.179 1.46e-78 254.0
Pslu5g01861 . 45 372 B3 DNA Binding Superfamily AT5G62000 40.0 1.80e-78 254.0
Pslu5g01863 . 45 372 B3 DNA Binding Superfamily AT5G62000 40.0 1.80e-78 254.0
Pslu5g01865 . 45 399 B3 DNA Binding Superfamily AT5G62000 41.047 2.63e-86 276.0
Pslu5g03471 . 431 711 B3 DNA Binding Superfamily AT3G24650 57.692 8.53e-93 304.0
Pslu5g04609 . 4 222 B3 DNA Binding Superfamily AT5G58280 50.655 7.94e-69 212.0
Pslu5g04855 . 8 739 B3 DNA Binding Superfamily AT2G30470 47.243 0.0 649.0
Pslu5g10415 . 16 353 B3 DNA Binding Superfamily AT1G59750 57.396 2.72e-138 407.0
Pslu5g10416 . 16 353 B3 DNA Binding Superfamily AT1G59750 54.142 4.51e-124 370.0
Pslu5g15038 ACH 5 227 B3 DNA Binding Superfamily AT3G19184 59.471 7.84e-82 244.0
Pslu5g15955 . 1 488 B3 DNA Binding Superfamily AT1G19220 65.217 0.0 640.0
Pslu6g00627 . 1 593 B3 DNA Binding Superfamily AT4G30080 56.149 0.0 615.0
Pslu6g02046 . 32 463 B3 DNA Binding Superfamily AT1G19850 72.831 0.0 652.0
Pslu6g02341 . 19 119 B3 DNA Binding Superfamily AT3G17010 33.333 7.80e-09 50.1
Pslu6g02842 . 9 132 B3 DNA Binding Superfamily AT5G66980 36.8 2.82e-21 89.0
Pslu6g15007 . 25 215 B3 DNA Binding Superfamily AT5G66980 25.592 6.01e-07 50.1
Pslu7g00251 . 5 508 B3 DNA Binding Superfamily AT4G00260 24.717 9.21e-37 140.0
Pslu7g11202 ACH 1 770 B3 DNA Binding Superfamily AT4G32010 46.996 0.0 697.0
Pslu7g12108 . 9 744 B3 DNA Binding Superfamily AT2G30470 46.814 0.0 619.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pslu B3 2.8e-14 CL0405 TF B3