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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21921 ATGAAATTAACTTCAATTTTGTTGCAGAGTAACAAATTAGGACGAAATGTGTTATCCGTAATTGTGTTCGTTGCAGTTATCCTGTTCACATGTGCTTCCGCAGTTCAGGAAGGGCAAACGTGTGTTAATAATAACAACTGTGACTTAGGGTTACATTGTGAAGCTTGTGTTGCTGATGGTAATGTTCGCCCTAGGTGTACTCGTGTTCAGCCTCTCAGTCCTTTTTCCAAGGTGAAAGGATTGCCGTTTAACCGGTATTCATGGTTAACGACGCATAATGCGTTTGCTAAATTGGGGGAGAAATCAGCTACAGGTTCTGTTGTTTTAGCTCCGATGAATCAGCAGGATTCTGTTACTTCTCAGCTTGATAATGGTGTGAGAGGGCTGATGCTTGATATGTACGACTTTGAGAATGACATTTGGTTATGTCATTCTTTTGGTGGCAAATGCTTCAACTACACAGCTTTTCAACCTGCTATCAATGTCCTGAAAGAGATTAGAGATTTCCTGGAAAATCATCCTACTGAAATAGTTACTCTAATCATTGAAGATTACGTTACCTCTCCAAATGGTCTAACTAATGTCTTCAACGCTGCTGGTCTAAGGAAATTCTGGTTTCCAGTATCTAAAATGCCAAGTGACGGCAGAGATTGGCCAACACTTGACTCCATGGTCCAACAGAATTACCGCTTGGTAGTTTTTACTTCCAAATCTACTAAACAGGCTACTGAAGGGATTGCATATGAATGGAAGTACTTGGTTGAGAACCAGTATGGAACAAATGGGATGAAAAGTGGGTCATGCCCTAACCGTGCTGAGTCTGCTCCTATGAACACTACATCAAGGTCTTTGGTTTTAATGAACTACTTTCCAGATACCCCTGATATCACCCAAGCTTGCAAGCACAACTCGGCTCCATTAATAAGCATGCTCAATACATGCCATGACTTAGCCAGTAAACGTTGGCCTAATTTCATCGCTGTCGACTTTTACAAGAGAAGTGATGGCGGAGGTGCACCTGCTGCTGTGGATATGGCTAACGGGCAGCTACTTTGTGGTTGTACCTCGATTTCAGACTGCAGGCCAAACATGACCTTTGGAGCCTGTAACATCCCAGAGGCCCGTGCTGCTCCAGCCCCAGTTTCAGCAATAAAAAGCTCAGGGAACCTTGGCGGTCAACCGGCTCCACTCAGATGGTTGTTCGGGACAGTTTTAACTGCTTTAACCTTGACATTGTGA 1239 43.5 MKLTSILLQSNKLGRNVLSVIVFVAVILFTCASAVQEGQTCVNNNNCDLGLHCEACVADGNVRPRCTRVQPLSPFSKVKGLPFNRYSWLTTHNAFAKLGEKSATGSVVLAPMNQQDSVTSQLDNGVRGLMLDMYDFENDIWLCHSFGGKCFNYTAFQPAINVLKEIRDFLENHPTEIVTLIIEDYVTSPNGLTNVFNAAGLRKFWFPVSKMPSDGRDWPTLDSMVQQNYRLVVFTSKSTKQATEGIAYEWKYLVENQYGTNGMKSGSCPNRAESAPMNTTSRSLVLMNYFPDTPDITQACKHNSAPLISMLNTCHDLASKRWPNFIAVDFYKRSDGGGAPAAVDMANGQLLCGCTSISDCRPNMTFGACNIPEARAAPAPVSAIKSSGNLGGQPAPLRWLFGTVLTALTLTL 412
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21921 412 Gene3D Phosphatidylinositol (PI) phosphodiesterase 74 337 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Pslu1g21921 412 SUPERFAMILY PLC-like phosphodiesterases 80 350 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Pslu1g21921 412 CDD PI-PLCc-At5g67130-like 73 347 - -
Pslu1g21921 412 PANTHER UNCHARACTERIZED 44 360 IPR051057 GO:0008081(PANTHER)
Pslu1g21921 412 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 82 190 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21921 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
135035 Pslu1g21921 Pslu5g15019
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:157281283 Pslu6g02622 Pslu-Chr6:17405245 dispersed
Pslu Pslu-Chr1:157281283 Pslu4g02118 Pslu-Chr4:13884256 wgd
Pslu Pslu-Chr1:157281283 Pslu5g15019 Pslu-Chr5:110059002 wgd