AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g21939 ATGGAGATCGCACCGCCGGTACCGGCCGCAGACGACGTAGCTACAAACGCATCGAATTCTTTTTCTCCTTCGATTCCTGTTAATAACAATAATTTATCCAGCAACAGGTTCGATTACGACGATGATGAAGATGAGGACGTTTGCCGGATCTGCCGGAATTCAGGTGACGCCGATAATCCTCTCCGGTATCCGTGTGCTTGTAGCGGTAGTATTAAGTTTGTTCATCAGGACTGTCTTCTTCAGTGGCTTAATCACAGCAACGCTCGTCACTGCGAGGTTTGCAAGCACCCCTTCTCGTTCTCCCCTGTGTATGCTGATAATGCGCCAACAAGGCTTCCTTTCCAGGAATTCGTAATTGGGATGGCAATGAAAGCCTATCATGTGTTGCAATTCTTCATTCGGCTCAGTTTTGTGCTCTCTGTATGGCTTTTGATCATCCCGTTTATTACTTTCTGGATATGGCGTTTCTCATTTGTTAGGAGTTTTGGTGAAGCTCAAAGACTGTTCTTGAGTCATATTTCAACTACATTCATACTTACCGACTGTCTTCACGGATTTCTACTCTCTGCAAGCATTGTTTTCATTTTCCTCGGTGCTACATCTTTGAGGGACTATTTTAGACATTTACGAGAACTTGGAGGCCAGGAAGGTGACAGAGAGGACGAAGGAGATAGAAATGGTGCTCGTGTCGCAAGGAGACAACCTGTACCAGCTAACCAAAATCTTATTGGTGAAGATGTTGGGGCACAAGGTATTGGTGGGGCTGGTCAGATGATCAGAAGAAATGCAGAAAATGTTGCAGCCAGGTGGGAGATGCAAGCAGCTCGTCTTGAGGCACATGTTGAACAGATGTTTGATGGTTTGGATGATGGTGATGGTGCAGAAGATGTTCCTTTTGATGAGCTAGTCGGCATGCAGGGACCTGTCTTCCATTTGGTGGAAAATGCATTTACTGTTCTTGCAAGCAACATGATATTTCTAGGTGTTGTGGTACTTGTTCCCTTTCACCTAGGGCGGTTTATCCTTTATCATTTATCATGGATTTTATCATCTGCCACCAGTCCAATGTTGTCGACTGTTGTACCGCTAACAGAACATGCACTTTCCCTGGCGAATATTACACTAAAAAACGCGTTGACTGCAGTCACAAATTTGACATCTGAGAAGAATCTTGCAGAGATGTTAAATGTGAATGCTACTGGGCTTAATGAGACACCAAATAATGTTACAATAGTTTCAGTAGATTTTCTGAAAGGGGCAATTACTGGGGGATCAAGACTATCTGATGCCACAACTCTTGCTGTTGGGTATATGTTCATTTTCTCAGTGATCATATTCTACCTTGGAGTTGTTGCACTGGTTAGGTACACCAGGGGAGAGCCCTTGACCATGGGAAGGTTTTATGGTATTGCTTCAATTGCAGAGACAATCCCTTCACTTTTCAGGCAGTTCTTAGCTGCAATGAGACATCTATTGACTATGATAAAGGTGGCATTTCTTTTGGTCATTGAGCTAGGGGTCTTCCCTCTAATGTGTGGTTGGTGGCTAGATGTTTGTACAATAAGAATGTTTGGCAAGTCTATCGGTCAAAGAGTCGACTTCTTTTCGGTCTCTCCCCTGGCAAGCTCGTTGATTCATTGGGTCGTTGGGATTGTCTACATGTTACAGATATCCATATTCGTCAGTCTTCTTCGAGGGGTTTTGCGCAATGGAGTCCTTTATTTTCTTCGAGATCCAGCTGATCCCAATTACAATCCATTCAGGGATTTAATTGATGATCCTGTGCACAAGCATGCACGCAGGGTTCTTTTGTCAGTTGCTGTTTATGGGAGCTTAATTGTTATGCTAGTGTTTTTGCCAGTTAAACTTGCTATGCGTGTGGCTCCCTCCATCTTCCCTCTTGACATATCAGTGTCAGACCCTTTTACAGAGATTCCTGCTGACATGCTTCTCTTCCAAATTTGCATTCCCTTTGCTGTTGAGCATTTTAAGCTACGTGCAACAATCAAGTCACTTCTACGCTATTGGTTTACTGCAGCTGGCTGGGCACTTGGTTTGACAGATTACTTATTGCCCAGACCTGAGGACAATGGTGTGCAAGAAAATGACAACGATCTAGCAAGGGCCCAAGATCATGCGGTAGTTGGTTTTTTGGCTCCTGAAAATTTGAACCGAGCAAGGCATGCAGCAACCAATGCTAATCTTGCAGAAGAAGCTGATGATGATGAACAATCTGATTCAGAGAGGTATACGTTTGTTCTCTGTATCGTGTTGCTTTTACTGGCGGCTTGGATGACATTGCTGATTGTCAATTCTGCTTTAATTGTGGTACCGGTATCCCTTGGACGAGTACTGTTCAATGCAGTTCCCCTTCTCCCTATCACACATGGCATCAAATGTAATGACATATATGCGTTTGTTATCGGAAGTTATGTGATCTGGACAGCATTGGCTGGCATAAGGTATTGCATTGATCAAATTAGAACAAGGAGAGCTGCAGTTTTACTAGGTCAAATTTGGAAATGGTGTTCCATCGTTGTTAAGAGTTCCGTACTGCTGTCAATTTGGATTTTTGTGATCCCAGTGCTGATTGGACTGCTATTCGAACTTTTGGTAATTGTACCGATGAGGGTGCCTGTGGATGAAAGCCCAGTGTTTCTGCTGTATCAGGATTGGGCTCTTGGACTAATTTTCCTTAAGATCTGGACTCGGCTGGTAATGCTGGATCACATGATGCCTCTAGTGGATGACAGCTGGCGAGTAAAGTTCGAGAGAGTGAGGGACGATGGTTTCTCGAGGCTACAAGCTTTTTGGGTGCTAAGAGAGATCGTGGTCCCCATCATCATGAAGCTTCTCACAGCTCTCTGTGTCCCTTACGTATTAGCCCGAGGAGTATTCCCTGTATTTGGGTACCCGTTAGTTGTTAACTCGGCTGTCTACAGATTTGCATGGCTAGGGTGCCTTAGTCTCAGTTTATTGTGCTTTTGTGCCAAGAGGTTCCACGTCTGGTTCACCAACCTTCACAACTCAATTAGAGACGATCGTTATTTGATTGGTCGAAGACTTCATAACTTTGGGGAAGATAACAAAGATGCACAAAACGAGGTTGAGACCTCTGACGCTGATGCAGGAGACACCGATATTGGTTTGAGGCATAGACGCCCTATCCCGGTGGAGGGCTAA 3183 44.42 MEIAPPVPAADDVATNASNSFSPSIPVNNNNLSSNRFDYDDDEDEDVCRICRNSGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARHCEVCKHPFSFSPVYADNAPTRLPFQEFVIGMAMKAYHVLQFFIRLSFVLSVWLLIIPFITFWIWRFSFVRSFGEAQRLFLSHISTTFILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEGDREDEGDRNGARVARRQPVPANQNLIGEDVGAQGIGGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDGLDDGDGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVVLVPFHLGRFILYHLSWILSSATSPMLSTVVPLTEHALSLANITLKNALTAVTNLTSEKNLAEMLNVNATGLNETPNNVTIVSVDFLKGAITGGSRLSDATTLAVGYMFIFSVIIFYLGVVALVRYTRGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLLTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSIGQRVDFFSVSPLASSLIHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRVAPSIFPLDISVSDPFTEIPADMLLFQICIPFAVEHFKLRATIKSLLRYWFTAAGWALGLTDYLLPRPEDNGVQENDNDLARAQDHAVVGFLAPENLNRARHAATNANLAEEADDDEQSDSERYTFVLCIVLLLLAAWMTLLIVNSALIVVPVSLGRVLFNAVPLLPITHGIKCNDIYAFVIGSYVIWTALAGIRYCIDQIRTRRAAVLLGQIWKWCSIVVKSSVLLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDDSWRVKFERVRDDGFSRLQAFWVLREIVVPIIMKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFAWLGCLSLSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDNKDAQNEVETSDADAGDTDIGLRHRRPIPVEG 1060
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g21939 1060 CDD RING-CH-C4HC3-MARCH6 47 96 - -
Pslu1g21939 1060 ProSiteProfiles Zinc finger RING-CH-type profile. 40 101 IPR011016 GO:0008270(InterPro)
Pslu1g21939 1060 PANTHER SSM4 PROTEIN 28 1036 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Pslu1g21939 1060 SUPERFAMILY RING-U-box 42 99 - -
Pslu1g21939 1060 SMART ringv-2 47 95 IPR011016 GO:0008270(InterPro)
Pslu1g21939 1060 MobiDBLite consensus disorder prediction 1044 1060 - -
Pslu1g21939 1060 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 33 106 IPR013083 -
Pslu1g21939 1060 FunFam Probable E3 ubiquitin ligase SUD1 33 106 - -
Pslu1g21939 1060 MobiDBLite consensus disorder prediction 13 27 - -
Pslu1g21939 1060 MobiDBLite consensus disorder prediction 1 27 - -
Pslu1g21939 1060 Coils Coil 260 280 - -
Pslu1g21939 1060 Pfam RING-variant domain 48 94 IPR011016 GO:0008270(InterPro)
Pslu1g21939 1060 MobiDBLite consensus disorder prediction 1031 1060 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g21939 K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
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Event-related genes

Select Gene_1 Gene_2 Event_name
135041 Pslu1g21939 Pslu3g16674
135042 Pslu1g21939 Pslu5g15010
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:157410279 Pslu3g16674 Pslu-Chr3:119490410 wgd
Pslu Pslu-Chr1:157410279 Pslu5g15010 Pslu-Chr5:109967103 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pslu1g00373 . 109 627 HMGR gene family AT1G76490 67.885 0.0 713.0
Pslu1g19498 . 68 138 HMGR gene family AT4G34100 34.722 1.59e-11 61.2
Pslu1g21939 ACH 67 1108 HMGR gene family AT4G34100 75.885 0.0 1578.0
Pslu2g01168 . 68 119 HMGR gene family AT4G34100 40.385 2.86e-09 56.2
Pslu2g03605 . 51 632 HMGR gene family AT1G76490 70.764 0.0 850.0
Pslu2g09408 . 68 141 HMGR gene family AT4G34100 35.135 1.49e-09 56.6
Pslu2g11213 . 40 129 HMGR gene family AT4G34100 30.0 1.47e-09 56.6
Pslu3g05839 . 51 632 HMGR gene family AT1G76490 71.307 0.0 844.0
Pslu3g16674 ACH 67 1108 HMGR gene family AT4G34100 75.285 0.0 1582.0
Pslu4g02309 . 46 118 HMGR gene family AT4G34100 31.507 1.23e-10 59.7
Pslu4g16425 . 68 141 HMGR gene family AT4G34100 36.486 1.27e-09 57.4
Pslu5g12700 . 68 129 HMGR gene family AT4G34100 37.097 6.62e-09 54.7
Pslu5g14331 . 82 629 HMGR gene family AT1G76490 66.065 0.0 759.0
Pslu5g14383 . 51 629 HMGR gene family AT1G76490 62.541 0.0 766.0
Pslu5g15010 ACH 67 1090 HMGR gene family AT4G34100 71.498 0.0 1506.0
Pslu6g00877 . 43 125 HMGR gene family AT4G34100 34.94 1.27e-11 62.8
Pslu6g01562 . 51 632 HMGR gene family AT1G76490 73.595 0.0 861.0
Pslu7g11292 . 68 118 HMGR gene family AT4G34100 38.462 2.85e-09 54.7