AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu2g13722 ATGGGGTGTGCAGCTTCTGTGTACAGAGTTGGAGGTAAGAAGCAAATGAAGATCCCTCTTGTTACCGTACTCGTTCCTTCCCTTCGTATTCCTGCGCATTCCAATATTCAAAAGCCACTTAAAGGCATTGTCCCTAAGGATCTTGCTGATCGTCTTACCTCTTTTAGAACTCAAATTGCTCTTCTGGCTGAAGAAACTGATATATCAGCTGTTCCTGAATTGTTACGTTCATTGGAAGAATACTTGTCGTTATTAGTTGGCCTTACTGATCAAGAACTTGGATGTCGAGAACTGATTGAATTTAAATGGAAAAGTATTGACGATGGACGACAAGAGATATGTGTTGCGGATTCGTGGTTTGAATTACTATCTGTTGTTCATATGATGGCTATGCTGACATTAATGGAGGCAAATTCAAAGTTGATTCCTGATCAAACTGTTTCTAGCGAATCTGTTGAATCTACAGATAACATACGCACTGCTGTCGACTTATTGGTGAAGGCAGCTGGTTACCTGCAGTTCTGTCTTCGTGAAATACTTGTCCAAATTCCACCTCATATCAAGATGAAGCTTCCGGTAGATTTGCAGGAGAATGTAATCGAAGCTACTTATATTCAAGCACTTGGGCAGGGAACAGAAATGCAGCTTGCATCTGCTGTTGAAAGTAAAAATGCTACTTTATCTGTTAAGAGAAGATTAGCATGTGAGCAACTAAGTTATTATGGCCAGGCGCATTACTGTTTGTCAACATGTGACAACCTTAACGGATATGGAAAGAAACATCTATCATTTATCAAATGGAAGTACCTTGAAGCAAAGGCTGCAGCATACTACTACCATGGTTTAATCACAGACAAGGGTACGGAACCATCCTGCCATATCAGTGCAGTGTGTTGTTTTCTTGCTGCAGAAGAGATTCTAACAGAGAGCAAGAAGGCATGTTTAAATTTTTGCCTAACACTTCCGATAACAAGGGCTCCAGCTGCGTGGGGTGCCATGAAGCATTTGAACAAGAAAATTCCTGAAACCACAGCTAAAAAGTCGCAGATGTACGCCTACCTTTTAGAGGAAGAAAAGAGTTTGGACGTATTACCGGACCTGCCTGAGTTCGAGTTGTCGTTAAAAGCAGACGAATATGAATTACCAGATAAAGATTCAGCGTGGGAGAGTGAAAAATGGATAATACCAAATCAAACACTTAAAACTCACTTAACAGATGATGAAGAAGATGATTAA 1236 40.45 MGCAASVYRVGGKKQMKIPLVTVLVPSLRIPAHSNIQKPLKGIVPKDLADRLTSFRTQIALLAEETDISAVPELLRSLEEYLSLLVGLTDQELGCRELIEFKWKSIDDGRQEICVADSWFELLSVVHMMAMLTLMEANSKLIPDQTVSSESVESTDNIRTAVDLLVKAAGYLQFCLREILVQIPPHIKMKLPVDLQENVIEATYIQALGQGTEMQLASAVESKNATLSVKRRLACEQLSYYGQAHYCLSTCDNLNGYGKKHLSFIKWKYLEAKAAAYYYHGLITDKGTEPSCHISAVCCFLAAEEILTESKKACLNFCLTLPITRAPAAWGAMKHLNKKIPETTAKKSQMYAYLLEEEKSLDVLPDLPEFELSLKADEYELPDKDSAWESEKWIIPNQTLKTHLTDDEEDD 411
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu2g13722 411 PANTHER UNCHARACTERIZED 14 401 IPR038898 -
Pslu2g13722 411 CDD BRO1-Alix-like 28 375 - -
Pslu2g13722 411 Pfam BRO1-like domain 50 311 IPR004328 -
Pslu2g13722 411 SMART BRO1-2 22 400 IPR004328 -
Pslu2g13722 411 Gene3D alix-aip1 like domains 38 395 IPR038499 -
Pslu2g13722 411 ProSiteProfiles BRO1 domain profile. 26 411 IPR004328 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu2g13722 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr1:4755935 Pslu2g13722 Pslu-Chr2:102305349 dispersed
Pslu Pslu-Chr2:102305349 Pslu3g02357 Pslu-Chr3:15824116 dispersed