AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu2g13757 ATGGCTGCTGTCAAAGCTGCGATTCATGTCTCCGACGTACCACATTTTGACCAGGTTAACGACAGCGCCGCCGGATCATTGCCGCTTTACGCCACCCGTCTTCCCGCCGGACTGGATATGAGTAATGGCCGAAAAGTGCTACCGAAATTTATGGTGGTGGGTCACCGTGGTCATGGGATGAACGTGTTACAGTCAACCGATCAAAGAATGAAAGCTTATAAAGAGAATTCAATTCTTTCTTTCAATAACGCTGCTAATCACCCACTTGATTACATTGAATTTGACGTTCAGGTGACAAAAGACGACACACCGGTCATTTTTCACGATGATTTCATCCTCTCCGAAGAAAACGGTGCTGTAACCGAAAAGAGGATCACCGAGTTGACTTTGGATGAATTCTTTAGCTATGGACCTCAAAGGGAAATAGGTCAGGTGGGAAAATCTTTGATGAGAAAATCAAATGGAAACATTGTCGGGTGGGACGTTGAGACCGATGACTATTTGTGTACTCTACAAGAAGCATTCCAAAAAGTTAACCCTTGTTTGGGATTCAACATTGAGTTGAAATTCGATGATTATGTTGTGTATGAACAAGAGTATCTCATTTATGTTCTTCAAGTCATCTTAAAGGTGGTATACGAAAATGCCCAACAAAGACCTGTTATTTTTTCAAGTTTCCAGCCTGATGCGGCCTTGCTTATGAAGAAACTTCAGCAGACGTACCCTGTGTACTTCTTGACGAATGGAGGAAACGAGATATTCAATGATGTGAGAATGAATTCATTGGAAGAAGCCAAAAAGCTGGCCTTGGAAGGTGGATTGGATGGCATTGTTTCTGAAGTGAAGGGTATTTTTAGAAATCCTTCGGTTGTAAGAGAGATTAATGAATCAAATCTCTCCATCCTCACTTATGGCAGATTAAATAATGTCCCTGAAGCCGTGCATGTTCAATATCTTATGGGGGTAGAAGGTGTTATCGTTGATTTAGTACAAGAAATCACGAGTGTCGTGAAGGCATACTGTGAAAGTGAGAAGACAAATTTACTAGGAGGGGAGGGAGGATTAAAGATGAAAGAGAAAACCGATAAGATTGAATTGTCGTTTCTGCTGAGCTTGATCTCACAAGTGATTCAACATTGA 1140 41.58 MAAVKAAIHVSDVPHFDQVNDSAAGSLPLYATRLPAGLDMSNGRKVLPKFMVVGHRGHGMNVLQSTDQRMKAYKENSILSFNNAANHPLDYIEFDVQVTKDDTPVIFHDDFILSEENGAVTEKRITELTLDEFFSYGPQREIGQVGKSLMRKSNGNIVGWDVETDDYLCTLQEAFQKVNPCLGFNIELKFDDYVVYEQEYLIYVLQVILKVVYENAQQRPVIFSSFQPDAALLMKKLQQTYPVYFLTNGGNEIFNDVRMNSLEEAKKLALEGGLDGIVSEVKGIFRNPSVVREINESNLSILTYGRLNNVPEAVHVQYLMGVEGVIVDLVQEITSVVKAYCESEKTNLLGGEGGLKMKEKTDKIELSFLLSLISQVIQH 379
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu2g13757 379 Pfam Glycerophosphoryl diester phosphodiesterase family 55 330 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Pslu2g13757 379 SUPERFAMILY PLC-like phosphodiesterases 48 331 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Pslu2g13757 379 Gene3D Phosphatidylinositol (PI) phosphodiesterase 45 339 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Pslu2g13757 379 ProSiteProfiles GP-PDE domain profile. 50 337 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Pslu2g13757 379 FunFam Glycerophosphodiester phosphodiesterase GDPD2 41 339 - -
Pslu2g13757 379 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 43 343 IPR051578 GO:0046475(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu2g13757 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
135540 Pslu2g13757 Pslu4g01707
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr2:102578269 Pslu4g01707 Pslu-Chr4:11218116 dispersed