AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu2g13895 ATGGGGAGAGGTAAGGTTGAACTCAAACGGATCGAAGATAAAAGCAGCCGGCAAGTCTCCTTCTCCAAACGCCGGAACGGATTGATGAAGAAAGCTCACGAGCTCGCCGTTCTCTGCGACGTCGATGTCGCACTTTTCGTTTTCTCCGGGAAGAATCGTCTGTTTGAGTATTCCAGCGGTGAAAGGTACACAGCCGAAGCAAAATAA 207 49.76 MGRGKVELKRIEDKSSRQVSFSKRRNGLMKKAHELAVLCDVDVALFVFSGKNRLFEYSSGERYTAEAK 68
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu2g13895 68 CDD MADS-MEF2-like 2 63 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Pslu2g13895 68 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Pslu2g13895 68 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Pslu2g13895 68 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Pslu2g13895 68 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Pslu2g13895 68 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 64 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Pslu2g13895 68 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Pslu2g13895 68 Gene3D - 13 67 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Pslu2g13895 68 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Pslu2g13895 68 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu2g13895 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr2:103507389 Pslu4g01717 Pslu-Chr4:11308997 dispersed
Pslu Pslu-Chr2:103497674 Pslu2g13895 Pslu-Chr2:103507389 tandem
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pslu1g00698 . 1 164 MADS-box Transcription Factor family AT5G65060 46.286 7.07e-39 131.0
Pslu1g00700 . 1 135 MADS-box Transcription Factor family AT5G65050 29.371 1.96e-06 43.1
Pslu1g00799 . 1 201 MADS-box Transcription Factor family AT5G60440 48.544 3.02e-54 174.0
Pslu1g01969 . 3 184 MADS-box Transcription Factor family AT5G60440 39.474 4.80e-31 114.0
Pslu1g03036 . 33 157 MADS-box Transcription Factor family AT1G29960 36.154 2.29e-19 78.6
Pslu1g05104 . 9 252 MADS-box Transcription Factor family AT4G18960 71.888 1.88e-119 340.0
Pslu1g05425 . 1 179 MADS-box Transcription Factor family AT5G26630 37.43 5.10e-27 102.0
Pslu1g05558 . 9 168 MADS-box Transcription Factor family AT1G29960 50.0 1.27e-58 179.0
Pslu1g06816 . 30 160 MADS-box Transcription Factor family AT5G60440 42.748 1.64e-26 102.0
Pslu1g06865 . 109 217 MADS-box Transcription Factor family AT2G22630 37.273 6.66e-13 60.8
Pslu1g07020 . 6 163 MADS-box Transcription Factor family AT5G60440 27.16 1.15e-08 51.2
Pslu1g09861 . 37 164 MADS-box Transcription Factor family AT1G29960 30.597 1.84e-12 61.2
Pslu1g20643 . 1 209 MADS-box Transcription Factor family AT2G45660 65.566 2.09e-85 250.0
Pslu2g00032 ACH 86 223 MADS-box Transcription Factor family AT3G57230 59.712 1.26e-53 167.0
Pslu2g00038 ACH 1 66 MADS-box Transcription Factor family AT2G14210 81.818 5.42e-34 114.0
Pslu2g00062 ACH 1 235 MADS-box Transcription Factor family AT2G22540 53.527 2.64e-77 231.0
Pslu2g01176 . 1 244 MADS-box Transcription Factor family AT1G18750 60.324 4.54e-101 302.0
Pslu2g01301 . 63 236 MADS-box Transcription Factor family AT5G60910 46.286 1.14e-42 140.0
Pslu2g01391 ACH 1 232 MADS-box Transcription Factor family AT3G54340 54.393 4.82e-86 253.0
Pslu2g01560 . 1 207 MADS-box Transcription Factor family AT4G09960 66.184 1.38e-93 273.0
Pslu2g01614 . 1 184 MADS-box Transcription Factor family AT1G22130 51.064 1.27e-52 174.0
Pslu2g01665 . 1 247 MADS-box Transcription Factor family AT5G23260 46.718 1.14e-65 203.0
Pslu2g02478 . 1 61 MADS-box Transcription Factor family AT5G60910 91.803 2.33e-35 117.0
Pslu2g02480 . 63 233 MADS-box Transcription Factor family AT1G26310 46.857 4.30e-47 153.0
Pslu2g02892 . 1 171 MADS-box Transcription Factor family AT3G57230 69.591 1.79e-83 246.0
Pslu2g03171 . 1 191 MADS-box Transcription Factor family AT3G54340 54.545 5.80e-69 209.0
Pslu2g05622 . 1 157 MADS-box Transcription Factor family AT5G48670 56.051 1.35e-53 177.0
Pslu2g05645 . 1 201 MADS-box Transcription Factor family AT5G48670 52.736 4.40e-59 188.0
Pslu2g13000 . 1 239 MADS-box Transcription Factor family AT2G22540 63.18 1.04e-96 282.0
Pslu2g13894 . 1 69 MADS-box Transcription Factor family AT4G09960 62.319 1.15e-25 92.4
Pslu2g13895 . 1 59 MADS-box Transcription Factor family AT5G60910 71.186 3.14e-26 94.0
Pslu2g13897 . 63 164 MADS-box Transcription Factor family AT5G65060 34.579 1.05e-12 60.1
Pslu2g15312 . 1 89 MADS-box Transcription Factor family AT1G24260 92.222 7.30e-55 169.0
Pslu2g15314 . 88 244 MADS-box Transcription Factor family AT1G24260 62.264 1.11e-56 176.0
Pslu3g01151 . 1 242 MADS-box Transcription Factor family AT1G24260 60.816 1.75e-93 273.0
Pslu3g02647 . 47 157 MADS-box Transcription Factor family AT1G29960 33.835 3.48e-16 73.9
Pslu3g13554 . 1 245 MADS-box Transcription Factor family AT1G22130 44.574 4.45e-65 207.0
Pslu3g14849 . 61 166 MADS-box Transcription Factor family AT2G24840 61.111 1.46e-40 133.0
Pslu3g14850 . 136 219 MADS-box Transcription Factor family AT5G60440 30.952 1.03e-09 51.6
Pslu3g17924 . 37 157 MADS-box Transcription Factor family AT1G29960 30.405 1.83e-11 60.1
Pslu4g00215 . 2 150 MADS-box Transcription Factor family AT1G31630 26.452 8.96e-15 68.6
Pslu4g01017 . 1 175 MADS-box Transcription Factor family AT5G60440 46.857 6.17e-47 154.0
Pslu4g01018 . 1 128 MADS-box Transcription Factor family AT5G60440 37.209 3.16e-23 90.1
Pslu4g01020 . 61 264 MADS-box Transcription Factor family AT2G24840 47.465 8.77e-61 189.0
Pslu4g01121 . 45 164 MADS-box Transcription Factor family AT1G29960 37.209 3.63e-20 80.5
Pslu4g01549 . 3 187 MADS-box Transcription Factor family AT5G60440 36.548 1.34e-35 126.0
Pslu4g01717 . 1 71 MADS-box Transcription Factor family AT2G45650 63.38 1.47e-25 94.0
Pslu4g01718 . 63 147 MADS-box Transcription Factor family AT5G65050 34.444 4.38e-07 45.1
Pslu4g02010 . 1 249 MADS-box Transcription Factor family AT3G02310 59.608 3.60e-100 290.0
Pslu4g02011 . 1 177 MADS-box Transcription Factor family AT1G69120 72.881 4.54e-91 267.0
Pslu4g02760 . 1 235 MADS-box Transcription Factor family AT2G22540 58.475 7.61e-86 252.0
Pslu4g05035 . 1 209 MADS-box Transcription Factor family AT2G45660 58.986 1.20e-76 228.0
Pslu4g05901 . 19 221 MADS-box Transcription Factor family AT4G18960 59.314 2.17e-78 233.0
Pslu4g05963 . 2 252 MADS-box Transcription Factor family AT4G18960 68.254 1.20e-116 332.0
Pslu4g14634 . 56 164 MADS-box Transcription Factor family AT5G65070 41.176 1.20e-13 64.7
Pslu4g14638 . 1 62 MADS-box Transcription Factor family AT5G65050 70.968 9.71e-26 92.0
Pslu5g07097 . 1 202 MADS-box Transcription Factor family AT5G20240 59.406 1.29e-84 247.0
Pslu5g08776 . 1 156 MADS-box Transcription Factor family AT5G55690 29.697 5.25e-14 68.9
Pslu5g08877 . 1 231 MADS-box Transcription Factor family AT5G55690 26.446 7.51e-15 71.6
Pslu5g09948 . 1 154 MADS-box Transcription Factor family AT2G34440 30.723 6.17e-20 80.9
Pslu5g09954 . 65 215 MADS-box Transcription Factor family AT2G24840 24.845 2.71e-08 50.4
Pslu5g09956 . 2 165 MADS-box Transcription Factor family AT2G34440 32.941 5.37e-28 102.0
Pslu5g11494 . 1 223 MADS-box Transcription Factor family AT5G13790 41.304 2.14e-50 164.0
Pslu5g12335 . 1 250 MADS-box Transcription Factor family AT3G02310 56.972 1.28e-87 258.0
Pslu5g12336 . 1 256 MADS-box Transcription Factor family AT1G69120 60.0 8.16e-106 305.0
Pslu5g13243 . 1 243 MADS-box Transcription Factor family AT1G24260 74.18 4.30e-124 350.0
Pslu5g13830 . 1 209 MADS-box Transcription Factor family AT2G45660 61.033 1.41e-80 238.0
Pslu5g13831 . 65 252 MADS-box Transcription Factor family AT2G45650 51.741 1.88e-55 174.0
Pslu5g14526 . 2 191 MADS-box Transcription Factor family AT5G60440 33.333 5.05e-29 107.0
Pslu5g14669 . 1 137 MADS-box Transcription Factor family AT5G55690 35.172 1.64e-23 94.7
Pslu5g14869 . 88 217 MADS-box Transcription Factor family AT2G22630 52.308 9.70e-36 121.0
Pslu5g14870 . 1 90 MADS-box Transcription Factor family AT4G37940 76.087 9.70e-47 147.0
Pslu5g15361 . 13 164 MADS-box Transcription Factor family AT1G29960 50.0 3.85e-54 167.0
Pslu6g00433 ACH 86 226 MADS-box Transcription Factor family AT4G37940 53.191 5.02e-43 140.0
Pslu6g00435 ACH 1 66 MADS-box Transcription Factor family AT2G14210 81.818 5.56e-34 114.0
Pslu6g00477 ACH 1 235 MADS-box Transcription Factor family AT2G22540 52.846 1.89e-74 224.0
Pslu6g01105 . 3 191 MADS-box Transcription Factor family AT5G60440 47.09 4.83e-52 167.0
Pslu6g01240 . 1 205 MADS-box Transcription Factor family AT5G62165 54.673 1.21e-73 220.0
Pslu6g01907 . 1 156 MADS-box Transcription Factor family AT3G05860 30.247 1.75e-19 80.5
Pslu6g01910 . 1 149 MADS-box Transcription Factor family AT3G05860 30.968 1.22e-19 80.9
Pslu6g01993 . 1 156 MADS-box Transcription Factor family AT5G48670 64.103 4.69e-61 192.0
Pslu6g03052 . 1 250 MADS-box Transcription Factor family AT3G02310 61.719 5.93e-108 310.0
Pslu6g12825 . 1 230 MADS-box Transcription Factor family AT4G09960 62.069 2.36e-92 270.0
Pslu6g12831 . 1 210 MADS-box Transcription Factor family AT1G71692 56.872 8.68e-73 217.0
Pslu6g14191 ACH 1 231 MADS-box Transcription Factor family AT3G54340 56.17 1.81e-91 267.0
Pslu6g14385 . 63 236 MADS-box Transcription Factor family AT5G60910 51.136 2.23e-48 155.0
Pslu6g14583 . 1 235 MADS-box Transcription Factor family AT2G22540 46.025 1.04e-58 183.0
Pslu6g15140 . 1 169 MADS-box Transcription Factor family AT4G22950 47.399 4.10e-44 145.0
Pslu7g07652 . 1 253 MADS-box Transcription Factor family AT5G13790 39.033 1.89e-56 180.0
Pslu7g07685 . 1 111 MADS-box Transcription Factor family AT4G24540 40.769 1.30e-22 89.0
Pslu7g13265 . 3 172 MADS-box Transcription Factor family AT5G60440 36.842 2.11e-32 119.0
Pslu7g13283 . 33 159 MADS-box Transcription Factor family AT1G29960 37.121 1.39e-20 81.6
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Pslu SRF-TF 3.6e-25 No_clan TF MADS-M-type