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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu5g12900 ATGGCTCTTTTGGAATCAAACAAAAACAGAGGGGAGGTAAGGATCCATGAGAATTTGGATGAACTTAGCACTGATTTAGCTGATTATGTAGCGGAATTATCCGAAGCATCGGTTAAAGAACGTGGCGTTTTCGCCATTGCTTTATCTGGTGGTTCACTTATTAGCTTATTGAGGAATCTATGTGGAGCTCCTTATAACAAAACTGTGGATTGGTCAAAATGGTATATATTTTGGGCAGATGAACGCGTAGTTGCAAAGAATCATGTCGATAGCAACTATAAACTTGCTAAAGATCATCTTTTGTCTAAGTTGCCTATTGTTCCGAGCCATGTACATTCCATCAATGATTCTCTTACTGCAGAAGAAGCTGCTAATGAATACGAGTTTGTGATCAGGCAACTAGTGAGAACCCGTGTGGTCAATGTTTCTGACATCAGCGATTTCCCAAAGTTTGACTTGATCCTTCTAGGGATGGGCCCAGATGGCCATGTGGCGTCTTTGTTTCCTAATCATAGGGTTCTTGATGAAAAGAATGAATGGGTGACATTCATCACCACCTCCCCTAAGCCACCCCCTGAAAGGATCACTTTCACGCTGCCAGTTATCAACTCTGCAGCCAATGTTGCAGTGGTCGTGACTGGTGGCGGAAAAGCAGAATCAGCTCATCTGGCGATAGATGATGTGGGTCCCGAGTGCCCGGTTTTGCCAGCTAGGCTGATTGAGCCAGTTGTAGGCAAACTGGTGTGGTTTTTGGATTACCAGGCTGGGTCAAAACTGAAGGGCTTTTCTCAATTTTCTAAGTAG 804 44.03 MALLESNKNRGEVRIHENLDELSTDLADYVAELSEASVKERGVFAIALSGGSLISLLRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVVNVSDISDFPKFDLILLGMGPDGHVASLFPNHRVLDEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGGGKAESAHLAIDDVGPECPVLPARLIEPVVGKLVWFLDYQAGSKLKGFSQFSK 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu5g12900 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 260 IPR039104 -
Pslu5g12900 267 CDD 6PGL 20 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Pslu5g12900 267 Gene3D - 8 262 - -
Pslu5g12900 267 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Pslu5g12900 267 NCBIfam 6-phosphogluconolactonase 15 259 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Pslu5g12900 267 Coils Coil 19 39 - -
Pslu5g12900 267 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 249 IPR006148 GO:0005975(InterPro)
Pslu5g12900 267 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 260 IPR037171 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu5g12900 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
136522 Pslu4g03347 Pslu5g12900
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4407853 Pslu Pslu3g17777 Pslu-Chr3:126406077 Pslu5g12900 Pslu-Chr5:95682910
4407855 Pslu Pslu3g17779 Pslu-Chr3:126411874 Pslu5g12900 Pslu-Chr5:95682910
4617760 Pslu Pslu4g03347 Pslu-Chr4:21880868 Pslu5g12900 Pslu-Chr5:95682910