AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu5g12922 ATGAAGTCTGAGATGGTAGTAGTTGAAGAATGGAGCGGTACTTCTTCAGACAAACTATCGTTAACCGCCGTTATATCGCCGTCTACTTCTCCGTCATCTTCATTCACTTTAGAAACTCACGGTAATCGATTTAACCTTTTCTCTCGAAGATTCCTCCAAGCATTTGTTCCTGAGGGGTTTCCGAGCAGCGTGACTCCGGATTACATCCCTTTTCAGACATGGGATTTATTGCAGGGCCTGTCAACATACATAAGGACCATGCTTTCAACACAAGCTCTTCTAAGTGCTATTGGAGTTGGTGAGAAATCAGCAACAGTCATTGGGGCTACTTTTCAGTGGTTTTTGAGGGATTTAACTGGAATGCTAGGAGGTGTCATGTTCACATTCTACCAGGGCTCAAACCTAGACAGCAATGCCAAAATGTGGCGTTTGGTTGCAGATCTCATGAATGATCTTGGAATGCTAATGGACCTTGTATCTCCATTGTTTCCTTCGGCATTTATATTCATTGTCTGCATAGGGAGCTTGTCAAGATCTTTCACTGGTGTTGCCAGTGGAGCAACTAGAGCTGCTTTGACCCAACATTTTGCTCTTCAAAATAATGCAGCAGATATATCCGCAAAGGAAGGAAGCCAAGAGACAGTTGCAACAATGATTGGAATGGCTTTAGGAATGCTTCTTGCGCACATTACAATGGGACACGCAACAATCATATGGTTCTCTTTTCTGTCGCTCACAATGTTCCACATGTATGCTAATTACAAAGCTGTTAGGTGCTTAAATCTGACTACATTAAACTGTGAAAGAAGCTCAATTCTTTTACTGCATTTCATGGAGACTAGCCAAGTTCTCTCTCCGAGAGAGGTCTCAGTCTTGGAGCATGTCTTACCATTATGGATCACTTCTTGGAGCTCAAAGGATACCAAATTTTTGTATACACGGGTACAATTAGGTGTGAGGGTTTCCTCACTAAATACCCCAGAAATGATGGAGTTATTGAGTTCTGCTGGATCTCAATACGAAAAAGCAAAATACCTATTGCTTGAGAATAATGGAATTGTCTGCGTTGTTATGCATAAAGATTCAACTATTGGAGATGTCATGCGGGGTTTCATTCATGCTCTTGTGATGGCAAATCTTTTAGATCATAAGCCTACATCATTACATACACATAGCCAAACATGGATGGACACAAACTATGAATCATTTCTTTCGAAGCTTCAATCGTCTGGTTGGAAAACAGAGCGACTTTTGTCATCATCTATCATTTGGAGGGCAAACTGGAGCCGTGTGACCCCTTACAAAAAGATAAATTAG 1317 41.46 MKSEMVVVEEWSGTSSDKLSLTAVISPSTSPSSSFTLETHGNRFNLFSRRFLQAFVPEGFPSSVTPDYIPFQTWDLLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVMFTFYQGSNLDSNAKMWRLVADLMNDLGMLMDLVSPLFPSAFIFIVCIGSLSRSFTGVASGATRAALTQHFALQNNAADISAKEGSQETVATMIGMALGMLLAHITMGHATIIWFSFLSLTMFHMYANYKAVRCLNLTTLNCERSSILLLHFMETSQVLSPREVSVLEHVLPLWITSWSSKDTKFLYTRVQLGVRVSSLNTPEMMELLSSAGSQYEKAKYLLLENNGIVCVVMHKDSTIGDVMRGFIHALVMANLLDHKPTSLHTHSQTWMDTNYESFLSKLQSSGWKTERLLSSSIIWRANWSRVTPYKKIN 438
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu5g12922 438 Pfam Vitamin B6 photo-protection and homoeostasis 47 280 IPR054549 -
Pslu5g12922 438 PANTHER RUS1 FAMILY PROTEIN C16ORF58 6 428 IPR006968 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu5g12922 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr3:111594755 Pslu5g12922 Pslu-Chr5:95848907 dispersed
Pslu Pslu-Chr3:122147321 Pslu5g12922 Pslu-Chr5:95848907 dispersed
Pslu Pslu-Chr5:95848907 Pslu1g09830 Pslu-Chr1:67769141 transposed