AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu5g12973 ATGTATAATCGGCATATGGCGTCGTCGGCAGTTGTTACTAGAGGCGGACAACCGAGTGATAGTGGTGATGCAGTGGTGACTCTTGATCAAGTTCCTAAATGGAGTGATGGAGATTTTAGATATTCTTATGAAATTGAAGATCCTAATTTTCCAAACATGCATTTTCCTGATCCGTTAACGTCGTCTTCTGGGGCGGAGAGTAGTGGGAAAGTTTCTAGGTTTCCAGTTGATCATGAAGTTAATTCGAAGATTTATCTTTGGAGAGGTAATCCGTGGAATCTTGAGGTAGATGCTGTTGTCAACTCTACCAATGAGAACTTGGATGAAGCGCATTGCAGTCCTGGTTTGCATGCTGCAGCTGGGCCTGGTCTTGCTGAAGAATGTGCGACATTGGGTGGTTGCAGAACAGGAATGGCAAAAGTTACTAATGCATACGATCTTCCTGCAAGGAGAATTATACATACAGTTGGGCCTAAGTATGCTGTGAAATATCATACTGCAGCAGAAAATGCTTTGAGTCACTGCTATCGCTCTTGTCTAGAACTTCTCATTGAGAATGGGCTTCAAAGCATTGCTATGGGTTGTATATACACAGAGGCAAAAAATTACCCTCGGGAACCAGCAGCCCATGTGGCAATAAGAACTGTTCGCCGGTTTCTTGAGAAACAAAAGAATGAAATCTCAGCTGTAGTCTTTTGCTTAACGACAACAAATGATACTGAAATATATAAGAGATTGCTTCCCCTCTACTTTCCCCGAGATAAAAAGGAGGAAGAGATTGCCATTTCGAAGCTTCCTGCTGATGTTGGAGATGAAAATGGCGAAACAGTAATAGACGAACGAAAAATCAGAATAAAACCATTACCGAATATCAAGAAGACTATTCCTAAACCTCCCCGAGCTTCACTAGATGTTCCTGTTAGTGATCAAGGATTGACTAGACGGAACTCTTCATATTTGGAATCATATTTAGATCCTGCTTTTATGTCCATAATTAAAGATCCCGATCAACGGCGTACTGAACAATGGGAAAGAACTGCTCGAGCACAAAATGGGTTCAACTTTGCTAAAATGTTAGGGTTTGGTGACCTTGGGGGCCCAGCTCTTTCTGCTGCTGAAGAATATTCGTTACATTCTAGATACCTCGCTAAAGCAAATTCTTTAAATCTTTCCGAAATAGCAGAAATGAAGATTTTGTATCGGGGAGGAGTAGACAGTGAAGGTCGTCCAGTAATGGTTGTCGTTGGGGCACATTTTCTCCTTCGATGCCTTGATCTTGAAAGATTTGTTCTTCATGTAATTAAGGAGTTTGAACCCTTGATCCAGAAACCTTATAGCATTGTTTACTTTCACTCTGCTGCATCTTTACAAGTGCAGCCAGATCTGGGATTTATGAGGAGATTACAGCAAATACTTGGTAGAAAAAGCCAGAGGAATCTTCATGCAATATATATCCTACATCCGACCTTTGGGCTGAAGGCTGCGATACTTGCGTTGCAACTATTAGTGGATGGCACGGTGTGGAAAAAAGTTGTATATGTTGATCGACTTCTTCAGCTTTTCAGATACGTTCCTCGGGAGCAGCTAACAATCCCCGATTTTGTGTTCCAGCATGACTTGGAAGTTAATGGAGGAAAAGGGCTAATTGTGGATCCAAGAACAAAATATGTTTACCATCGACCGTAG 1686 41.76 MYNRHMASSAVVTRGGQPSDSGDAVVTLDQVPKWSDGDFRYSYEIEDPNFPNMHFPDPLTSSSGAESSGKVSRFPVDHEVNSKIYLWRGNPWNLEVDAVVNSTNENLDEAHCSPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRIIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLQSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKNEISAVVFCLTTTNDTEIYKRLLPLYFPRDKKEEEIAISKLPADVGDENGETVIDERKIRIKPLPNIKKTIPKPPRASLDVPVSDQGLTRRNSSYLESYLDPAFMSIIKDPDQRRTEQWERTARAQNGFNFAKMLGFGDLGGPALSAAEEYSLHSRYLAKANSLNLSEIAEMKILYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLHVIKEFEPLIQKPYSIVYFHSAASLQVQPDLGFMRRLQQILGRKSQRNLHAIYILHPTFGLKAAILALQLLVDGTVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP 561
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu5g12973 561 SMART sec14-4 392 538 IPR001251 -
Pslu5g12973 561 Gene3D Leucine Aminopeptidase, subunit E, domain 1 17 256 IPR043472 -
Pslu5g12973 561 CDD SEC14 396 532 IPR001251 -
Pslu5g12973 561 MobiDBLite consensus disorder prediction 55 69 - -
Pslu5g12973 561 CDD Macro-GDAP2-like 82 250 IPR035793 -
Pslu5g12973 561 SUPERFAMILY Macro domain-like 70 280 IPR043472 -
Pslu5g12973 561 SMART YBR022w-8 83 212 IPR002589 -
Pslu5g12973 561 Gene3D - 391 542 IPR036865 -
Pslu5g12973 561 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 21 285 - -
Pslu5g12973 561 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 386 535 IPR001251 -
Pslu5g12973 561 ProSiteProfiles Macro domain profile. 71 251 IPR002589 -
Pslu5g12973 561 SUPERFAMILY CRAL-TRIO domain 390 529 IPR036865 -
Pslu5g12973 561 Pfam Macro domain 100 212 IPR002589 -
Pslu5g12973 561 Pfam Divergent CRAL-TRIO domain 408 539 IPR001251 -
Pslu5g12973 561 MobiDBLite consensus disorder prediction 1 25 - -
Pslu5g12973 561 MobiDBLite consensus disorder prediction 52 71 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu5g12973 K24997 ganglioside-induced differentiation-associated protein 2