AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu5g12999 ATGGGAACAGAAGTACACTGCAAAAGCTCTTTTGAAGGGTATCACTCCATGAGGGATGTTAATGAGGATTCCAATAGTAGCAGCTGGCCAGTTTTTTATGGAGACAAACCTTTGACGCCTAATGGCGGCCATTATTACAACGGTTTTATACCAAGGACCATTTCAGATGCATATCCAGGGTGTGACAAGGATGCATTAAAGCAAAAAATGCTTGAACATGAAGCCATATTCAAGAATCAGGTTTATGAACTTCATCGCCTTTATAGAAGACAAAGAGACATGATGGAAGAATATAAAAGAAAGGAGTACCATAAGCATCGGATTTCTATTGACACATCATCATCTTCAAGTCTCTTGCCATCACAAAAGCCTTACGAAGATGGACACAAATGGCAAATACCGAGCATTCCGTTGACCAACTCCAATTCCGCTAGACCATCTATTTTTGGAGCAGAGATAAATAATTCACCTTTAAGTTGTTCAAAAGGGAATGATAATAATAATAGTTCAAAGGATTGTGAAATCATGGAATGTAGTAGACCATCAAAAGTTAGAAAAAAGTTATTCGATCTTGAACTCCCACCTGATGAAAACGTTGATCATGACGAACACGAGGAAATTCAATATAAACAGGCTTCTGCAGAATCGAGTTATAAAGACACTTCATCGGCTCAATGTTTTAGGAGTTCTAATGGATTGGCTGATCTTAATGAACCTTTTCATGTTGACGAAGCAATGGTTCGTGGGTCGGTTGATGGCTTTGGTCCCTCAGCTAAACCAAGCGGGTCACCGTTTCTTGGCCCAATGCATAATCTCTCTCAAAGTGGACGGCCTAGTGGTGCGTTTAACCATTTATTGCTTGAGGGAAAAAGCAATGGAAGAGATTGGTTGTCAAATACTCGTGAACAAGGAAATAACAGAAGCAACATGAACTTTACGCAAGGAACGTATCCCGAAATTCCAACAAGAATTCAGGATCATCCGCGTTTTAACCAAACTCCTTTACCGTTTCCAACTTCACGTACACCTAGTTCATACCCATACATAGATTCTGGAAATTCTTGGGGAAAACCAAATGGTAGTTTGACTCATAAGTTGACCTCATTTCAGAAACAGCCCTCTTTTGTACCGTCTCCACAAAGTCATCCGGTTTTCGGAGATAAATGGCGTACAAATGGATTTTCAACACCAAATGGAATTTACCGTGGGTCGTCATCTGGGTCAAAAGATCCATATGCCCGTCTGCCTTCTGGTGGGTTTGATAGCCGACACTGCAGTAATCTGGATGATAGGTCACAAAAGATCTTCAAAGGTTCAAACTTTATTGACTTGACTGATACTACCAAAGGCATTGATTTGAATAAAGACAGCAATAGTGCAAGAAAATGCGATCAAACAGTACCCTCATGGCTTCAAGCCAAGCCAGCAATCTGTAAAAATGACAATTTGGGTAATAATGGAAAGATTCTTGGGTTTCCAGCTCTTGAGAATTCTTGTGTTGCGAAATACGATTCGTCCTCACTGGTATCCAGATCCCTTCATTGTCCTGAAAATGGAAAAATAAAAACAGAAATGGAACACAAAGGATTTGACATCAATGTGGCTTACGTAGAAGCTTGTAATGTTGAGACAGAAACCGATACAGAGATTGAGAAAATCAAGAATCATTTTGACTTAAATTCGTGTTTGACCGAGGAGGAAGATGTTCTACTGCCCGATTCTGTTAAAAGTTCAAGTGAGAACACAAAGAAGAAAACAATCGACATCGACTTAGAAGCTCCAGCTGTCGCTGAGGAAGAAGAAGCCGTTAATGAGGTCAAGAAAACTGACGACGATGAATTACTTGCCAAGGTGGCAGCTGAAGCAATAATTACGATGACTGGGATATCCTGTCAGCAAGATCAAGCGGGTTCCACCTCTGAGGTGGTGGTTCGTTCTGATGACCCTGATGATGACCGCCTCTTATTATTAGTTGAGGCAATTGAAAATGGGGGGTCAGTTACTACCGAGTTGGATGAATATGAACAGTTGACTTTGCAACTAGAGTTGACTAAAGAGGAAGATTACATGCCAAAGCCTTTGGGTCCTGATTTCCGCGAACCCGAAGAAGTGGGCCCGTCGACAGGCCCCACCCGACCCAGAAGAGGTCAAGCTAGGCGTGGTAGGCCCAGGAGGGACTTTCAAAGGGACATTCTTCCCGGGCTGGTTTCACTTTCGAGGCATGAGGTAACCGAAGATATTCAAATATTTGGTGGGTTAATGAGAGCTACAGGGCATTCATGGAATGTAGGTCTGACTAGGAGGAATGGAACACGTGGAAGACGGAAGTCTGTCGCAGTGTCTGTCGAGCCGCCTCCTGCCGCCACTCCGCCACCACCGCCGCCACCACCACCACCATTACCATTATCGGAGGTGGTGGGATTGGAGGAAAGAAGCCTAACGGGGTGGGGTAAGACGACCAGACGACCTCGAAGGCAACGATGTGCTGCAGGTAACAGCTCTGTGGCTGTCCAGTTAACGTAA 2523 43.4 MGTEVHCKSSFEGYHSMRDVNEDSNSSSWPVFYGDKPLTPNGGHYYNGFIPRTISDAYPGCDKDALKQKMLEHEAIFKNQVYELHRLYRRQRDMMEEYKRKEYHKHRISIDTSSSSSLLPSQKPYEDGHKWQIPSIPLTNSNSARPSIFGAEINNSPLSCSKGNDNNNSSKDCEIMECSRPSKVRKKLFDLELPPDENVDHDEHEEIQYKQASAESSYKDTSSAQCFRSSNGLADLNEPFHVDEAMVRGSVDGFGPSAKPSGSPFLGPMHNLSQSGRPSGAFNHLLLEGKSNGRDWLSNTREQGNNRSNMNFTQGTYPEIPTRIQDHPRFNQTPLPFPTSRTPSSYPYIDSGNSWGKPNGSLTHKLTSFQKQPSFVPSPQSHPVFGDKWRTNGFSTPNGIYRGSSSGSKDPYARLPSGGFDSRHCSNLDDRSQKIFKGSNFIDLTDTTKGIDLNKDSNSARKCDQTVPSWLQAKPAICKNDNLGNNGKILGFPALENSCVAKYDSSSLVSRSLHCPENGKIKTEMEHKGFDINVAYVEACNVETETDTEIEKIKNHFDLNSCLTEEEDVLLPDSVKSSSENTKKKTIDIDLEAPAVAEEEEAVNEVKKTDDDELLAKVAAEAIITMTGISCQQDQAGSTSEVVVRSDDPDDDRLLLLVEAIENGGSVTTELDEYEQLTLQLELTKEEDYMPKPLGPDFREPEEVGPSTGPTRPRRGQARRGRPRRDFQRDILPGLVSLSRHEVTEDIQIFGGLMRATGHSWNVGLTRRNGTRGRRKSVAVSVEPPPAATPPPPPPPPPPLPLSEVVGLEERSLTGWGKTTRRPRRQRCAAGNSSVAVQLT 840
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu5g12999 840 Pfam Plant protein of unknown function (DUF863) 338 455 IPR008581 -
Pslu5g12999 840 Pfam Plant protein of unknown function (DUF863) 144 220 IPR008581 -
Pslu5g12999 840 Pfam Plant protein of unknown function (DUF863) 463 828 IPR008581 -
Pslu5g12999 840 Pfam Plant protein of unknown function (DUF863) 219 319 IPR008581 -
Pslu5g12999 840 MobiDBLite consensus disorder prediction 764 840 - -
Pslu5g12999 840 MobiDBLite consensus disorder prediction 686 728 - -
Pslu5g12999 840 MobiDBLite consensus disorder prediction 784 803 - -
Pslu5g12999 840 Coils Coil 667 687 - -
Pslu5g12999 840 MobiDBLite consensus disorder prediction 108 137 - -
Pslu5g12999 840 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED 17 828 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu5g12999 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Pslu Pslu-Chr4:12810751 Pslu5g12999 Pslu-Chr5:96313645 dispersed
Pslu Pslu-Chr5:96313645 Pslu6g03237 Pslu-Chr6:21695684 transposed