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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00015 ATGTTTCTCTCACTTTCACTTTCATCACCAATGGCGATTATACGGCACAAACGCACACTTGTTCTCATGCTACTATGTGTTATTCTTCCTTTTTCTCAATCGGAATCGGTGACTGAATCCTCCATTCACGATCTCCTCAAAAGCAAAGGCCTACCGGTCGGTCTTTTCCCCAAGGAAGTGGAATCATTCACTCTCTACGACACAGGGCTTCTGGAAGTTTTTTTGAGAGGACCTTGCTTAACGAAATTCGACACTATGGCTTTCTACGAAAGCACCGTCAGAGCTAACCTTACTTTCGGTAGTCTTACAGGCGTTGAAGGCCTTTCTCAGGAAGAGCTTTTCCTCTGGTTGCCGGTCAAAGATATTATCGTTGACGATCCGAAATCTGGACTCATATTATTTGACATTGGCCTCGCTCACAAGCAGCTATCTCTCTCACTTTTTGAAGATCCTCCAGATTGCAAATCCGAAGGTGTTTCGAATTTGAAGAAGAAATCTAGAAAGGAGATAGGATTTGATGCTCAAATGTAG 531 43.31 MFLSLSLSSPMAIIRHKRTLVLMLLCVILPFSQSESVTESSIHDLLKSKGLPVGLFPKEVESFTLYDTGLLEVFLRGPCLTKFDTMAFYESTVRANLTFGSLTGVEGLSQEELFLWLPVKDIIVDDPKSGLILFDIGLAHKQLSLSLFEDPPDCKSEGVSNLKKKSRKEIGFDAQM 176
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00015 176 Pfam Protein of unknown function, DUF538 42 149 IPR007493 -
Sain12g00015 176 Gene3D - 29 158 IPR036758 -
Sain12g00015 176 SUPERFAMILY At5g01610-like 19 156 IPR036758 -
Sain12g00015 176 PANTHER T31J12.3 PROTEIN-RELATED 35 155 IPR007493 -
Sain12g00015 176 FunFam Uncharacterized protein At3g07460 30 158 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00015 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4661715 Sain Sain12g00015 Sain-Chr12:66893 Sain14g02301 Sain-Chr14:97255857
4695632 Sain Sain12g00015 Sain-Chr12:66893 Sain15g01169 Sain-Chr15:83180836