AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00027 ATGGAGTCGATACTGGCGAGGGCGCTGGAGTATACTCTTAAGTACTGGCTTAAATCTTTCACCAGAGATCAGTTCAAGTTACAAGGAAGGACTGTTCAGCTATCCAATTTAGATATAAACGGTGATGCCTTGCACGCAAGTCTTGGATTGCCGCCGGCATTGAATGTTACCACCGCTAAAGTCGGCAAGTTACAGATTATTCTCCCTTATTTCAGCAATGTACAAGTTGAGCCGATTGTTGTGCAAATCGATAAGCTCGATTTGGTATTGGAGGAAAATGACGATTTGGAGGCATATAATAAGAGCACAGACAGTGCACAGACGCCATCCAGTCCTGCAAAAAGCAGTGGATATGGATTTGCGGACAAGATTGCTGACGGAATGACATTAGAAGTACGGACTGTCAATCTTTTACTTGAGACTCATGGGGGTGCTAGACGTCGCGGAGGAGCAACTTGGGCATCACCAATGGCATCTATTACTATCCGCAACCTCTTGCTTTATACCACAAACGAGAACTGGCAGGTTGTAAACCTTAAGGAAGCGAGGGACTTTTCAAATGACAAGAAGTTCATCTATGTGTTCAAAAAGCTTGAATGGGAGCATCTATCCATCGACCTCCTCCCTCACCCTGACATGTTTGCAGCATTTTCTGAAGGTGCATTTAAGGATGATGATGGTGCAAAGCGGGTATTCTTTGGTGGGGAGAGGTTCCTTGAAGGAATATCTGGAGAAGCTTATATTACCATACAAAGGACAGACCTTAACAGTCCACTAGGCTTGGAACTCCAGTTACATATCACTGAAGCCGTGTGCCCAGCTTTGAGTGAACCAGGGCTTCGAGCTCTTCTTCGCTTCTTTACGGGATTGTATGCCTGTCTAAATAGAGGAGATGTGAATCCAAATGCTCAAGAGCGATCAGCAGAAGCTGCAGGGCGTACACTAGTCTCCATTATGGTGGACCATATATTTTTCTGCATCAAGGATACAGACTTCCAGTTAGAGCTTTTGATGCAGTCACTTCTCTTCTCTCGGGCCAGCCTTTCTGATGGAGAAACTGCCAAATGCTTAACTCGGGTGATGATTGGTGGACTAATTCTGCGGGATACTTCCTCTCGCCCACCATGTGCATTAGTGCAACCATCTATGCAGGATGCTGCAGAGAAACTGCTACACATTCCCGATTTTGGAAAGGATTTCTGTCCACCAATATATCCATTAGGGGATCAGCAATGGAAATTAAGTGACAATGCTCCACTCATGTCCCTCCATTGTCTTCAGTTTATGCCCTCGCCTACTCCACCATCCTTTTGTTCACAAACTGTCATCAACTGCCAGCCTCTTATGATACATCTTCAAGAAGAGTCCTGTCTAAGAATATCATCCTTACTAGCTGATGGAATTGTGATTAATCCTGGTGATATATCGCTAGATTTCTCTGTGAACTCCCTTGAAATAAATGTGAAAGGATTAGATATCACTGTTCCACTGGAAAACCGGAAGTCTAACTCTCCTTCATGTGACAATTACCCTATATATGAGAGCTCCTTTACTGGAGCAAGGCTTCATATTGAGAAGTTATTCTTTCATGAGTCACCTTCCCTGAGGCTGAAGCTGCTGAATCTTGAGAAGGACCCAGCATGCTTCTGTCTATGGAAGGGGCAACCTATTGATGCCAGCCAGAAAAAATGGACAACTGGAGCTTCTCTCCTTAGTCTGTCTCTGGAAACATGTAATAACTCGAAAGGAGCCGGTGGTTCTCTTTCACACTCAGAATTGTGGAGCTGTGTCGAGATTAAAGGTGCTTGCATTCAGGTAGCAATGGTAACAGCAGACGGAAGCCCTTTAATAGATGTCCCTCCCCCAGGGGGTGTTGTTAGAGTAGGAGTCGCTTGTGAACACTATGTGTCCAATACCTCGGTTGAGCAACTATTTTTTGTGTTGGATCTCTATGCCTACTTTGGTATGGTCAGTGAGAAGATGGCCATGGTTGGAAGAAATAAACATAAGAAAGTGGTGAAGCATGATGGAAGTCTGATCGAAAAGGCTCCTGGTGATACTGCTGTTAGCTTAGCAGTTAAAGACCTTAAGCTAACATTTCTAGAAGCTTCCTCCATGAACATTCAGGGAATGCCTCTGGTTCAGTTTGTCGGGGAAGATCTGTTCATGGAAGTTACTCATAGAACCTTGGGTGGTGCCATGGCCATTTCATCAACTTTACGGTGGGACAAAGTTCAGGTGGAGTGTGCAGAGACTGAGAGAAGCTCTATACATGCAAATGGTGTAATGCGGGATGCTACTACAGATTTTCTTCCTGTTCAGAATGGCTACCCTAAATTGAGAGCTGTCTTTTGGGTGCAAAACACAAGGAATTGTGAAGCAAATGTCTCAATTCCATTTTTGAATTTACGCATGGTGCATGTTATTCCGTATAATGCACAGGATACAGAGTGTCATAGTTTAAGTGTGTCAGCTTGTATTGCGGGTGTACGCCTTGCAGGAGGAATGAATTATGCTGAAGCTCTGCTCCACCGTTTTGGAATTCTAGGACCAGATGGTGGGCCAGGGGTTGGGCTCTCCAAGGGTTTGGAGCATTTATCTGCTGGGCCGTTGTCAAAACTTTTCAAAGCATCACCTCTACTTGTCGAGGATTTCAGGGAGAGTTGTAAAAGTGAAAGCATGGAGGAGGAGAAGCATAGTGGTTACTTGCAGTTGGGTGCACCTGATGATGTGGATATATCACTAGAATTGAAGGACTGGTTATTTGCTTTGGAGGGTGCAGAGATGGCAGAAAGATGGTGGTTCTACAGTACAGATGATTCTTACAGAGAAGAGAGGTGCTGGCACACAACTTTTGAGAGTTTTAAAGTTAAAGCAAACAGCAGCAAAAATAACTCCATGAATGGCAAAAAGAGTTTGCCTGGAAAGTATCCTGTTGAATCAGCGACGGTCGGTGTTGAAGGCTTGAAGACATTGAAACCCCAGCAGCACAAACAAAGTGTCGAGTCACATGGTGGGGTAGATCTTGAAGCTGACATAGTAGTGTTATCTGAAGATGATGGTGCCAATAAGTGGGTGGTGGAAAATTTAAAATTCTGTGTGAAACATCCGGTTGAGGCAATTGTAAGCAAGGATGAGCTCCAACATGTTGCTCAACTATGTAAGTCAGAAGTTGATTCCATGGGGAGAATAACTGCTGGGGTTTTGCGTGTGTTGAAGCTAGAAGGATCAGTTGGTCAGACAGCAATGGATCAACTAAGCAACCTTGGAAGTGAAGGCTTCGACAAGATCTTTTCACCAAAAACCCTGGGCAGAGATAGTAATGCTTCTAGTCCGTCTTCCCTAGCAACTTCAGATAACCAATGTCCTTCTTCGTCCTTCAATTCAACATTAACTTCACTTGAGGTTGCATTATTAGATTCACAGACAAATTGTGCAGCTCTTGCCGATGAATTAAGCACTTCTGAATCTTCCAAGCCACATCTTCATAGTGTAGAACAACTGGCTCAGAAACTAAAGAGTATGCAGAAATTGTTGTCAAAGTTGAGGACTCAAGTATAA 3561 44.09 MESILARALEYTLKYWLKSFTRDQFKLQGRTVQLSNLDINGDALHASLGLPPALNVTTAKVGKLQIILPYFSNVQVEPIVVQIDKLDLVLEENDDLEAYNKSTDSAQTPSSPAKSSGYGFADKIADGMTLEVRTVNLLLETHGGARRRGGATWASPMASITIRNLLLYTTNENWQVVNLKEARDFSNDKKFIYVFKKLEWEHLSIDLLPHPDMFAAFSEGAFKDDDGAKRVFFGGERFLEGISGEAYITIQRTDLNSPLGLELQLHITEAVCPALSEPGLRALLRFFTGLYACLNRGDVNPNAQERSAEAAGRTLVSIMVDHIFFCIKDTDFQLELLMQSLLFSRASLSDGETAKCLTRVMIGGLILRDTSSRPPCALVQPSMQDAAEKLLHIPDFGKDFCPPIYPLGDQQWKLSDNAPLMSLHCLQFMPSPTPPSFCSQTVINCQPLMIHLQEESCLRISSLLADGIVINPGDISLDFSVNSLEINVKGLDITVPLENRKSNSPSCDNYPIYESSFTGARLHIEKLFFHESPSLRLKLLNLEKDPACFCLWKGQPIDASQKKWTTGASLLSLSLETCNNSKGAGGSLSHSELWSCVEIKGACIQVAMVTADGSPLIDVPPPGGVVRVGVACEHYVSNTSVEQLFFVLDLYAYFGMVSEKMAMVGRNKHKKVVKHDGSLIEKAPGDTAVSLAVKDLKLTFLEASSMNIQGMPLVQFVGEDLFMEVTHRTLGGAMAISSTLRWDKVQVECAETERSSIHANGVMRDATTDFLPVQNGYPKLRAVFWVQNTRNCEANVSIPFLNLRMVHVIPYNAQDTECHSLSVSACIAGVRLAGGMNYAEALLHRFGILGPDGGPGVGLSKGLEHLSAGPLSKLFKASPLLVEDFRESCKSESMEEEKHSGYLQLGAPDDVDISLELKDWLFALEGAEMAERWWFYSTDDSYREERCWHTTFESFKVKANSSKNNSMNGKKSLPGKYPVESATVGVEGLKTLKPQQHKQSVESHGGVDLEADIVVLSEDDGANKWVVENLKFCVKHPVEAIVSKDELQHVAQLCKSEVDSMGRITAGVLRVLKLEGSVGQTAMDQLSNLGSEGFDKIFSPKTLGRDSNASSPSSLATSDNQCPSSSFNSTLTSLEVALLDSQTNCAALADELSTSESSKPHLHSVEQLAQKLKSMQKLLSKLRTQV 1186
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00027 1186 Coils Coil 1165 1185 - -
Sain12g00027 1186 MobiDBLite consensus disorder prediction 1104 1123 - -
Sain12g00027 1186 PANTHER UNCHARACTERIZED 1 1184 IPR026728 -
Sain12g00027 1186 Pfam VPS13-like, N-terminal 1 105 IPR026854 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00027 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138615 Sain12g00027 Sain9g00170
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4726524 Sain Sain12g00027 Sain-Chr12:291190 Sain9g00170 Sain-Chr9:3977107