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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00028 ATGACGAAGACAACGTTAGGGTGCGAACCAGCCGTCGGATCATTGGTCCCGTCGAAGAAGAGGGATTACAGAGTCACCAACCGCCTACAGGAAGGCAAGCGTCCAATTTATGCCGTCGTTTTCAACTTCATCGACTCTCGTTATTACAATGTCTTTGCCACCGTTGGTGGTAATCGCGTTACTGTATACCAATGCCTTGAAGGTGGCGTTATTGCTGTACTGCAGTCTTACATTGATGAAGATAAGGATGAGTCTTTCTACACTGTGAGCTGGGCATGTGATGCTGATGGGACACCATTACTAGTAGCTGGAGGAATTAATGGTATAATCCGTGTCATTGATGCTGGCAATGAGAAGATACACAAGAGTTTCGTAGGTCATGGGGACTCGGTAAACGAAATTAGAACACAAGCACTAAGACCTTCTCTCGTGCTTTCTGCAAGTAAAGATGAATCTGTTCGCTTGTGGAATGTTCAAACTGGAATATGCATTTTGATATTTGCTGGAGCTGGTGGTCATCGAAATGAAGTGTTAAGTGTGGATTTTCATCCTTCAGACATATATCGTATTGCCAGTTGTGGTATGGATAACACTGTAAAGATCTGGTCGATGAAAGAGTTTTGGACGTATGTTGAGAGGTCTTTTACATGGGAGGGACTTCCTTCACAATTTCCTACAAAATATGTGCAATTTCCGGTATTAATTGCTTCAATCCATACAAATTATGTCGACTGCATTAGGTGGCTTGGCGATTTCATACTATCCAAGAGCGTTGATAATGAGTTCATATTGTGGGAGCCAAAGATGAAAGAGCAGTCTCCAGGAGAGGGCACAGTAGATATCCTTCAGAAATATCCGGTTCCCGAGTGTGACATTTGGTTTATAAAGCTTTCCTGTGATTTCCATTACAATACAGCAGCTATAGGCAACAGGGAAGGGAAAATATTTGTATGGGAATTGCAGAGTAGCCCCCCTTCTCTCATTGCAAGGTTATCTCATGTTCAGTCTAAATCTCCCATCAGGCAAACTGCCATGTCGTTTGATGGAAGCACAATACTGAGTTGCTGTGAAGACGGAACCATTTGGCGTTGGGATACAGTCGCAACCTCGTAG 1113 43.49 MTKTTLGCEPAVGSLVPSKKRDYRVTNRLQEGKRPIYAVVFNFIDSRYYNVFATVGGNRVTVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACDADGTPLLVAGGINGIIRVIDAGNEKIHKSFVGHGDSVNEIRTQALRPSLVLSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVERSFTWEGLPSQFPTKYVQFPVLIASIHTNYVDCIRWLGDFILSKSVDNEFILWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKLSCDFHYNTAAIGNREGKIFVWELQSSPPSLIARLSHVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDTVATS 370
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00028 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 205 - -
Sain12g00028 370 Pfam WD domain, G-beta repeat 121 157 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 Pfam WD domain, G-beta repeat 333 365 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 Pfam WD domain, G-beta repeat 172 203 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 161 - -
Sain12g00028 370 SUPERFAMILY WD40 repeat-like 26 365 IPR036322 GO:0005515(InterPro)
Sain12g00028 370 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Sain12g00028 370 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Sain12g00028 370 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Sain12g00028 370 SMART WD40-4 278 319 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 SMART WD40-4 67 114 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 SMART WD40-4 160 203 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 SMART WD40-4 229 266 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 SMART WD40-4 22 64 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 SMART WD40-4 117 157 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 SMART WD40-4 324 365 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 205 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
Sain12g00028 370 Gene3D - 19 368 IPR015943 GO:0005515(InterPro)
Sain12g00028 370 PANTHER POLYCOMB PROTEIN 7 366 IPR051243 GO:0000122(PANTHER)|GO:0006342(PANTHER)|GO:0031491(PANTHER)|GO:0035098(PANTHER)
Sain12g00028 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 166 IPR001680 GO:0005515(InterPro)
Sain12g00028 370 FunFam polycomb group protein FIE1 19 368 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00028 K11462 polycomb protein EED