Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sain12g00048	ATGGCCTTCTCAACCACAACTCCACTTCACAGAATCACCGCCATCCCTTCCAACTCTTCTTCTTCTTCTTCTTCTTCACCATTTCTCAAACCCTACCCTTCGCAACTGTCCTTTCAATCCAAGAAATTTGGGTCCTGCTCACCCAAGTCGTTTGCCGTTTCTTGTGTCCTCGCTAAGCAATCACCAGACCAAATGGCGGCGGTTCTTGATGAATTGTCGATCCTCCAGCGCCCTGATTCTCTCGGCCGTTTTGGTAAGTATGGCGGCAAGTATGTCCCTGAAACCCTAATGTATGCTCTCTCCGAGCTTGAATCCGCTTTCAAAGCCCTCGCCACCGACCATCAATTCCAGAAGGAATTAGATGGGATATTGAAAGACTATGTTGGTAGGGAAAGCCCTCTTTATTTTGCAGAACGCCTTACAGAGCATTACAAACGTCCCAATGGTGAAGGACCCGAAATCTACCTTAAAAGGGAAGATCTTAACCATACTGGTGCACATAAGATCAACAATGCTGTTGCACAGGCTTTGCTGGCCAAGAAGTTAGGAAAAGAACGAATCATTGCCGAAACTGGTGCTGGACAGCATGGAGTTGCAACCGCCACTGTATGCGCACGCTTTGGATTGCAATGCATCATCTATATGGGTGCTCAAGATATGGAAAGACAAGCCCTTAATGTATTCAGAATGAAGCTCCTTGGAGCAGAGGTTAGAGCTGTTCATTCTGGGACAGCCACACTGAAGGATGCTACATCAGAGGCCATAAGAGACTGGGTGACCAATGTGGAAACAACTCATTACATCTTGGGCTCAGTCGCCGGGCCACACCCCTACCCCATGATGGTAAGGGAGTTCCATGCAGTAATTGGTAAGGAAACAAGAAAGCAAGCATTGGAAAAATGGGGTGGAAGACCAGATGTGTTGGTTGCTTGTGTTGGTGGAGGATCCAATGCTATGGGGCTGTTCCATGAGTTTGTTGACGATAAAGATGTTAGAATGATCGGAGTAGAGGCTGCAGGTTTTGGCCTAGACAGTGGAAAGCATGCAGCTACCTTAACGAAAGGAGAGGTTGGGGTATTGCATGGAGCCATGAGCTATTTGTTACAAGATGACGATGGACAAATCATTGAGCCCCATTCTATTAGTGCAGGGCTGGACTACCCGGGAGTTGGACCTGAGCACAGCTTTCTGAAAGATATCGGTCGTGCTGAATATTATAGTGTCACTGATGAGGAAGCATTGGAAGCATTTAAGAGACTGTCTAGATTAGAGGGCATAATCCCAGCTCTGGAGACATCTCATGCACTGGCTTATCTAGAGAAACTGTGTCCAACCCTACCTAATGGCACCAAGGTTGTCCTTAACTGCAGTGGTAGAGGAGACAAGGATGTTCATACTGCCATCAAGCATCTGCAGGTTTGA	1422	47.19	MAFSTTTPLHRITAIPSNSSSSSSSSPFLKPYPSQLSFQSKKFGSCSPKSFAVSCVLAKQSPDQMAAVLDELSILQRPDSLGRFGKYGGKYVPETLMYALSELESAFKALATDHQFQKELDGILKDYVGRESPLYFAERLTEHYKRPNGEGPEIYLKREDLNHTGAHKINNAVAQALLAKKLGKERIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMKLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGRPDVLVACVGGGSNAMGLFHEFVDDKDVRMIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYYSVTDEEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKHLQV	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sain12g00048	473	PIRSF	Trp-syn-beta	70	473	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Sain12g00048	473	Gene3D	-	84	286	IPR036052	-
	Sain12g00048	473	FunFam	Tryptophan synthase beta chain	130	284	-	-
	Sain12g00048	473	NCBIfam	tryptophan synthase subunit beta	82	470	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Sain12g00048	473	Hamap	Tryptophan synthase beta chain [trpB].	77	471	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Sain12g00048	473	ProSitePatterns	Tryptophan synthase beta chain pyridoxal-phosphate attachment site.	161	175	IPR006653	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Sain12g00048	473	Pfam	Pyridoxal-phosphate dependent enzyme	130	458	IPR001926	-
	Sain12g00048	473	Gene3D	-	129	464	IPR036052	-
	Sain12g00048	473	FunFam	Tryptophan synthase beta chain	285	464	-	-
	Sain12g00048	473	CDD	Trp-synth-B	99	466	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Sain12g00048	473	SUPERFAMILY	Tryptophan synthase beta subunit-like PLP-dependent enzymes	78	470	IPR036052	-
	Sain12g00048	473	PANTHER	TRYPTOPHAN SYNTHASE-RELATED	61	472	IPR023026	GO:0000162(InterPro)\|GO:0000162(PANTHER)\|GO:0004834(InterPro)\|GO:0004834(PANTHER)\|GO:0005737(PANTHER)\|GO:0009570(PANTHER)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sain12g00048	K01696	tryptophan synthase beta chain [EC:4.2.1.20]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	138624	Sain12g00048	Sain13g02556

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	4703725	Sain	Sain1g01590	Sain-Chr1:104452275	Sain12g00048	Sain-Chr12:550667
	4722738	Sain	Sain12g00048	Sain-Chr12:550667	Sain13g02556	Sain-Chr13:136709817