AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00062 ATGAGGGTTCATATCACTCGTAATTTAAACTTAGCGTTAGGTTACCGCCGTGTCGTCGCTTGTTCTTCTGCATCCATCTCGTCACTCCAGGCAGCGGCGGCGGTTTATTCTCTAGCCAAGTTTCGTCGGAAGAATTATCCTTCTGACTTAGGCCGGTTCAAATTATCGACTGTTGCTGCAGTGACAGATTCTTCGTGCGTCAAGACAATGGGTTCGCAAGCGGGGGAGTTGGAATGGCCGGCCAACAAAGTTAGGGATTCCTTTGTAAAGTTTTTTGAAGAGAAGAATCACGTTTATTGGAAATCAAGCCCAGTTGTTCCTGTCAATGATCCCACCCTTCTCTTTGCAAATGCTGGAATGAATCAGTTCAAGCCTATCTTTTTGGGCACAGCCGATCCTAACACTTCCTTGAGCAAACTGACCCGTGCCTGCAACACCCAGAAGTGCATTCGAGCTGGTGGGAAGCATAATGATCTCGATGATGTTGGCAAAGACACTTATCACCACACCTTCTTTGAGATGCTTGGTAACTGGTCTTTTGGGGACTATTTTAAACACGAAGCCATTGGATGGGCATGGGAGCTTCTCACAACTGTTTTTAAGCTACCTACCGATCGAATATATGCTACTTATTTTGGTGGTGATGAAAAATTGGGCCTTCCTGCTGACAATGAAGCTAGAGAGATATGGCTCAAATATCTGCCACCCAAACGAGTATTGCCTTTTGGTTGTAAAGACAACTTCTGGGAGATGGGTGATACTGGACCTTGTGGACCCTGTACTGAGATACACTTTGATAGAATTGGCGGTCGTGATGCTGCAGAGTTGGTTAACAATGATGATCCTACATTGATCGAGATATGGAATGTTGTTTTTATTCAGTTTAACCGAGAATCTGATGGTTCTTTGAAACCTCTGCCTTCCAAACACGTGGATACTGGAATGGGTTTTGAAAGATTGACTTCAATTCTTCAGAACAAGATGAGCAACTATGATACTGATGTCTTCATGCCTATCTTCGATGCTATCCAGAAGGCAACTGGCGCTAGATCATATTCAGGGAAAGTTGGGCCAGATGATGTGGATGGAACTGACATGGCGTACAGAGTTGTTGCTGATCACATTAGGACTCTTTCATTTGCCATTGCAGATGGTTCTTGTCCAGGAAATGAAGGGCGTGAATATGTTTTGCGACGCATTCTTCGCCGAGCTGTTCGCTATGGAACAGAAGTACTGAAAGCACAGCCAGGATTTTTTAATGGATTGGTAAAAGTTGTGGTGGATGTAATGGGCCATGTCTTTCCTGAGTTAAAGGAAAAAGAGGCACACATTAGAGAGATTATAGCAGAAGAGGAAGCAAGTTTTGGGAGGACGTTACTCCATGGAATTGAGAAGTTTAAGAGGACGGTTCAAGATGTTCAGGGAAAGATATTTAGTGGACAGGATGCATTTGTGTTGTGGGACACTTTTGGATTTCCATTGGATCTGACTCAGTTGATGGCAGAGGAACGAGAGTTGAAAGTTGATGTTGAGGGTTTCAATATTGCTATGAATGAAGCTAGAGAACGATCAAGAAACGCCCAGAATAAGCAAGCTGCTGTTGCTATTGTCATGAATGCTGATGCTACCTCTGCACTGCATAAGAGAGGGATTGCCACAACAAATGATAGTTTCAAGTTTACATGGTTTCAGGACCACAAAAGTGTAATCAAAGCCATTTACACTGGGAGTGAGTACGTGGAACATGCTGCTGCTGGCAATGATGTTGGTATTATTCTCGAGAGCACAAGTTTTTACGCTGAGCAAGGTGGTCAGATATTTGATACCGGAGTACTTGGAGGCCCCTCTGGATCATTTGAAGTTTGTAATGTTCAAGTTTACGGAGGTTTTGTGATTCATCTTGGTAAAATTACAAACGAATCTGGAAAATTCTGCGTGGGAGATGAAGTAATTTGTAAGGTTGACTATGACAGGCGTCAACGCATTGCTCCTAACCATACGTGTACACACATGTTAAATTTTGCCCTCCGGGAAGTACTTGGGAATCATGTTGACCAGAAAGGATCTATTGTTCTTCCAGAGAAATTAAGATATGACTTTTCCCATGGGAAACCCGTAAAGCCGGAAGACCTTCGCAAGATTGAATCCATTGTGAATGAACAAATTAAAGCTGAACTAGATGTTTCTGCAAAGGAGGCAAGCCTTGCTGATGCAAAGCGTGTAAATGGTTTGCGAGCGGTTTTTGGTGAAGTGTATCCTGATCCAGTTAGGATTGTTGCAATTGGCCGAAAAGTAGAAGATCTCTTGGCTGATCCTGAAAATGAAGAGTGGCTGTCCATATCTGCAGAGCTTTGTGGAGGGACCCATATCACAAATACACGAGAAGCGAAGGCATTTGCACTTTTGTCTGAGGAGGGAATTGCGAAGGGGATTCGGAGAGTAACTGCTGTAACAACAGAATATGCTTTTGAGGCTATGAGAAGGGCATCTGAACTTGAACAGGAAGTTGATCAGGCATCAAAGCTAGAAGGAAGCCCTCTTGAACAGAAAGTGGCCTCTTTAAATGGTCAAGTAGAGTCGGCAGCTATTCCAACAGCAAAGAAGGCTGATCTTAAGGCAAAGATCTCCATCCTTCAGAATCAAGTAATAAAAGCAAAAAAGAAGACCGCTGAGGAGAACATACGCAAAGCCGTTGACTCAGCCACTAAAGCCGCAGAAGTTGCCTCTTCTGAGGGGAAGTCCTTCTGCATTTCACATGTTGGTGTGGGATCGGATACTGCTGCTATTCGTGAAGCAGTTGTCAAAGTCATGGAACAGAAGGGATTGGCGGTGATGGTTTTTAGCACTGATGAACAATCAAAGAAAGCCTTGGTTTGTGCTGGTGTGCCGGAAAAAGGCGATAACGGCAACCGCCTGAAGGTTTTAGAGTGGCTGAAGGCGGCGCTGAAGCCACTTGAAGGCAAAGGTGGTGGAGGGAAAGGCGGTCTTGCTCAAGGCCAGGGACCCGATATCAAACATGTAGATGAAGCAATCGACGTGGCCAAATCGTTTGCAGCGCTGAAACTGGGCTGA 3072 44.5 MRVHITRNLNLALGYRRVVACSSASISSLQAAAAVYSLAKFRRKNYPSDLGRFKLSTVAAVTDSSCVKTMGSQAGELEWPANKVRDSFVKFFEEKNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKHEAIGWAWELLTTVFKLPTDRIYATYFGGDEKLGLPADNEAREIWLKYLPPKRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAELVNNDDPTLIEIWNVVFIQFNRESDGSLKPLPSKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIQKATGARSYSGKVGPDDVDGTDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAQPGFFNGLVKVVVDVMGHVFPELKEKEAHIREIIAEEEASFGRTLLHGIEKFKRTVQDVQGKIFSGQDAFVLWDTFGFPLDLTQLMAEERELKVDVEGFNIAMNEARERSRNAQNKQAAVAIVMNADATSALHKRGIATTNDSFKFTWFQDHKSVIKAIYTGSEYVEHAAAGNDVGIILESTSFYAEQGGQIFDTGVLGGPSGSFEVCNVQVYGGFVIHLGKITNESGKFCVGDEVICKVDYDRRQRIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRYDFSHGKPVKPEDLRKIESIVNEQIKAELDVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRKVEDLLADPENEEWLSISAELCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTEYAFEAMRRASELEQEVDQASKLEGSPLEQKVASLNGQVESAAIPTAKKADLKAKISILQNQVIKAKKKTAEENIRKAVDSATKAAEVASSEGKSFCISHVGVGSDTAAIREAVVKVMEQKGLAVMVFSTDEQSKKALVCAGVPEKGDNGNRLKVLEWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLG 1023
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00062 1023 Coils Coil 822 842 - -
Sain12g00062 1023 CDD AlaRS-core 81 327 - -
Sain12g00062 1023 Pfam tRNA synthetases class II (A) 83 658 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Sain12g00062 1023 Pfam DHHA1 domain 871 1017 IPR003156 GO:0003676(InterPro)
Sain12g00062 1023 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 79 828 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Sain12g00062 1023 FunFam Alanine--tRNA ligase 910 1018 - -
Sain12g00062 1023 NCBIfam alanine--tRNA ligase 83 1001 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Sain12g00062 1023 Hamap Alanine--tRNA ligase [alaS]. 79 1022 IPR023033 GO:0004813(InterPro)
Sain12g00062 1023 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 332 535 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Sain12g00062 1023 Gene3D Bira Bifunctional Protein; Domain 2 80 328 IPR045864 -
Sain12g00062 1023 FunFam Alanine--tRNA ligase 553 653 - -
Sain12g00062 1023 FunFam Alanine--tRNA ligase, cytoplasmic 78 328 - -
Sain12g00062 1023 Gene3D - 655 831 - -
Sain12g00062 1023 SUPERFAMILY ThrRS-AlaRS common domain 654 827 IPR018163 GO:0000166(InterPro)
Sain12g00062 1023 SUPERFAMILY Translation proteins 585 654 IPR009000 -
Sain12g00062 1023 Gene3D - 580 654 - -
Sain12g00062 1023 PRINTS Alanyl-tRNA synthetase signature 285 296 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Sain12g00062 1023 PRINTS Alanyl-tRNA synthetase signature 312 325 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Sain12g00062 1023 PRINTS Alanyl-tRNA synthetase signature 369 385 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Sain12g00062 1023 PRINTS Alanyl-tRNA synthetase signature 393 406 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Sain12g00062 1023 PRINTS Alanyl-tRNA synthetase signature 157 168 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Sain12g00062 1023 PANTHER ALANYL-TRNA SYNTHETASE 70 1019 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Sain12g00062 1023 FunFam Alanine--tRNA ligase, cytoplasmic 655 830 - -
Sain12g00062 1023 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 756 814 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Sain12g00062 1023 Gene3D - 910 1018 - -
Sain12g00062 1023 SUPERFAMILY Class II aaRS and biotin synthetases 80 331 IPR045864 -
Sain12g00062 1023 Coils Coil 868 888 - -
Sain12g00062 1023 SMART tRNA-SAD-4 756 815 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Sain12g00062 1023 Coils Coil 510 530 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00062 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Event-related genes

Select Gene_1 Gene_2 Event_name
138627 Sain12g00062 Sain13g02561
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4699329 Sain Sain4g02652 Sain-Chr4:122046421 Sain12g00062 Sain-Chr12:660442
4722740 Sain Sain12g00062 Sain-Chr12:660442 Sain13g02561 Sain-Chr13:136745866