AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00073 ATGGGTCGGATCGTCGGCGGGAAGAAGAAGGGACGACCATCTAATACAGATCTACGACGCCGGAACTCTCGTGTTGAACCAGAGCCACAGCCACGGAGGAGCTGCCGGAGACGAAATGTCAGGTACAATTTTGACATCGATGATTATGTAGACGATGAAGAGTTCTACCGGGACGTTGGGAGGAGGGAGAAGAAGCTTAGGGTGCTGCTCGGTGAATATGATTCCGAGTCCAATCGGTGCGAGGAGAGTTCGTCGTCTGATGAATATGATGAAGTTAAGCCATGGAAGAAACGGAAAATTGACGCCGGTGATGGGGAATTCGACGGAGAGGATGATGAAATTGGAGAGATAATAGGAGGAAAACTGGAAGCAACAGATGAAGAAGAAGAAGATGCAGAAAAAGGAGGGGCCAACTCTGTTCCTGGGACACCATCAGATGGGGTATTTTTGCCTGATAAAAAGACTCTAGAGTTGATACTAGACAAACTTCAAAAAAAAGATACTTATGGTGTCTATGCTGAACCAGTTGATCCCGATGAGTTGCCTGATTACCATACCGTGATAAAGCAGCCTATGGATTTTGGCATGGTTAGGAGAAAACTGGCAAAAGGAACTTACTTAACCTTGGAACAATTTGAGAGTGATGTGATTCTAATATGCACCAATGCAATGCAATACAATGCACCAGATACAATTTACTATAAACAGGCAAGCTCTATCCTGGAGCTCGCAAAAACAAAATTCCACCGGCTAAGCTTTACCGTTGATCACCCAATAAACCCAAGTTCGTCACCACCTAAAAAGCAACCAAAGAAGTCAATGGTCCGAACAGTGCAGGAACCCGCTGGCTCTGATTTGTCTGGAGAATTTCAAAATGGTTCATCTGTCCAAGCTAAGCCCCCTAGTGATGAAAATCGACGGACCACATTCAATATATCAATTCAGCCCATCATCGAGCCTGAGAGTATATTTTCAATCTTTGAGGGTGAAAGCAAGCAGCTTATTCCCGTTGGGCTGCATTCAGATAATTCTTACACTCGGAGCCTGGCTCGTTTTGCTGCAACTCTCGGATCTGTTGCTTGGAAAATTGCTTCACGAAGAATCGAGGAGGCTTTGCCGGAAGGCATCAAATTTGGGCCTGGATGGGTTGGAGAATATGAACCACTTACAACTCCTGTTCTAACGATTGGAAATTGCACCTTGAAAGAATCAGATTTTCTTACAAGGTATCTTGGTGCCGCTGATGCGAGAACCGATGACAAAGCTTCTAGAAACACAGCTGATAGTGATGAAACACCTTCTAGAAATCCTGCTCGTAAACAAGAGTCTCCTAACGGACCCATTTCGGAATTGGGACCCACATCTGTTTCTTTTCTGCGAGCTAATCTTTGTGAAACTGCTAGTACAAAGCATCTGCAACAGAACTCAGAATCATGGAGCTTAATGGAGCTCAACGAGAAAGGTCTGCCACAAGTTTCAAGAAACAAAAACGAAAACAGAAATTCCCACCACCACCACCGCCAACATCAGGTTTCCGCAGTTCATGGTGAGTTCCCGACTTCCAGGGCTCGACTTCAACAACCCATCCATGGTTTCATCCAGAATGAGGCCCGGTTCCAAAACCGACAAGTGGTTTTCCCTCAGCTTGTAACTGCAGATCTGTCGAGGTTTCAGGTGCAGTCTCATTGGAGAGCGGTTAGCCGTCAACAACCACAGCAGCCACCGCCAAGATCGAAACAACAAGAATCACGACCGCCTGATTTGAACATAGGTTACCAGTCTCCGGTGAGACAGTCTTCAGGCATGGTCGTAGATTCTCAACATCCGGATTTGGCTTTGCAACTCTAA 1848 45.89 MGRIVGGKKKGRPSNTDLRRRNSRVEPEPQPRRSCRRRNVRYNFDIDDYVDDEEFYRDVGRREKKLRVLLGEYDSESNRCEESSSSDEYDEVKPWKKRKIDAGDGEFDGEDDEIGEIIGGKLEATDEEEEDAEKGGANSVPGTPSDGVFLPDKKTLELILDKLQKKDTYGVYAEPVDPDELPDYHTVIKQPMDFGMVRRKLAKGTYLTLEQFESDVILICTNAMQYNAPDTIYYKQASSILELAKTKFHRLSFTVDHPINPSSSPPKKQPKKSMVRTVQEPAGSDLSGEFQNGSSVQAKPPSDENRRTTFNISIQPIIEPESIFSIFEGESKQLIPVGLHSDNSYTRSLARFAATLGSVAWKIASRRIEEALPEGIKFGPGWVGEYEPLTTPVLTIGNCTLKESDFLTRYLGAADARTDDKASRNTADSDETPSRNPARKQESPNGPISELGPTSVSFLRANLCETASTKHLQQNSESWSLMELNEKGLPQVSRNKNENRNSHHHHRQHQVSAVHGEFPTSRARLQQPIHGFIQNEARFQNRQVVFPQLVTADLSRFQVQSHWRAVSRQQPQQPPPRSKQQESRPPDLNIGYQSPVRQSSGMVVDSQHPDLALQL 615
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00073 615 ProSitePatterns Bromodomain signature. 170 226 IPR018359 -
Sain12g00073 615 MobiDBLite consensus disorder prediction 122 147 - -
Sain12g00073 615 MobiDBLite consensus disorder prediction 1 38 - -
Sain12g00073 615 MobiDBLite consensus disorder prediction 73 93 - -
Sain12g00073 615 CDD Bromodomain 152 248 - -
Sain12g00073 615 Gene3D - 123 257 IPR036427 GO:0005515(InterPro)
Sain12g00073 615 MobiDBLite consensus disorder prediction 256 270 - -
Sain12g00073 615 MobiDBLite consensus disorder prediction 10 38 - -
Sain12g00073 615 PRINTS Bromodomain signature 215 234 IPR001487 GO:0005515(InterPro)
Sain12g00073 615 PRINTS Bromodomain signature 181 197 IPR001487 GO:0005515(InterPro)
Sain12g00073 615 PRINTS Bromodomain signature 197 215 IPR001487 GO:0005515(InterPro)
Sain12g00073 615 SUPERFAMILY Bromodomain 141 250 IPR036427 GO:0005515(InterPro)
Sain12g00073 615 MobiDBLite consensus disorder prediction 284 307 - -
Sain12g00073 615 ProSiteProfiles Bromodomain profile. 164 234 IPR001487 GO:0005515(InterPro)
Sain12g00073 615 MobiDBLite consensus disorder prediction 255 307 - -
Sain12g00073 615 SMART bromo-6 145 253 IPR001487 GO:0005515(InterPro)
Sain12g00073 615 MobiDBLite consensus disorder prediction 417 452 - -
Sain12g00073 615 MobiDBLite consensus disorder prediction 417 437 - -
Sain12g00073 615 MobiDBLite consensus disorder prediction 492 513 - -
Sain12g00073 615 Pfam Bromodomain 159 238 IPR001487 GO:0005515(InterPro)
Sain12g00073 615 PANTHER BROMODOMAIN CONTAINING PROTEIN 8 288 IPR051831 -
Sain12g00073 615 MobiDBLite consensus disorder prediction 563 605 - -
Sain12g00073 615 MobiDBLite consensus disorder prediction 563 615 - -
Sain12g00073 615 MobiDBLite consensus disorder prediction 438 452 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00073 K22184 bromodomain-containing protein 9
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Event-related genes

Select Gene_1 Gene_2 Event_name
138632 Sain12g00073 Sain9g00075
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4661756 Sain Sain12g00073 Sain-Chr12:822851 Sain4g01118 Sain-Chr4:33580113
4726532 Sain Sain12g00073 Sain-Chr12:822851 Sain9g00123 Sain-Chr9:2853983