AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00077 ATGGATATAGAAATTGTTGGGAGGCATGCGCTTCTCTTCGACGATGATACCACGGCAGCCTTCGTTAACTCAGAAGACGCACTTGTGGAATGGAATTCTCTACTAATCGATCGTTACGACGTCCGCCACCTCCTTTCCACCCCTCCGCCGTCTCGAAGGCGGCGCAATCCACAAACATCGCACTCATCTAACGCTGATGCGGAAATCGATTATGAACGCTACCTGGATCTCCCCTCGCCTTCCGAGGAACAAGAAGCAGATGCAAAACCACAGCCTGTTGGTGGGTTTAATGCCGTTCCTTTTTCTTATGGAAACTTTGAGGCTTTTAATGATCAAAAGACTGCCGAGACCGAATCGGAATGCCCTGGATTTCACCCCCCCTTCCCTGTTCCTGACAGCCTGGTTCAAAACTTGCCTCCTACAGAGAAGGTTCATCAGATTATTTCGAGGACTGCTCTTTTTGTCAGCAAAAATGGAGGTCAATCAGAGATTGTTTTGAGGGTGAAACAAGGAGACAATCCGACTTTTGGGTTCTTAATGCCTGATCATCACCTACATCCGTACTTCAGGTTTCTGGTTGATCACCAGGATCTTCTGCAGTCAAAAGACAATGGACAGCCTGAAAATGATGAGAAAACATCCAATACTGAGAATGCGGCAGGAGCAGGAGCAGGAGCACTGTCTTTGCTTGGTTCTCTATATGGCACTGGTGAGGACGAGGATGGTGGGGCCGAGCATGCATCATCATCTAGAGAGTGTGTATCTGATGTGACCATCCCTCTTGCAGCAGGGAATACCATGTTGCCAGCTGGAAAAGATGAGCCTGTTTCAAAGCCTTCACTTTCTTCTAAGGAAGATACACCTATTTTAAAAAGGAATTCTTTAACAAATGCATTGAAAGCTGGACGAATTAGCAGCACGAGAAAAGGTGAGTCCTTAGGTTCACTCTCTGCTGTTCCAGATAAGTTGCGGGCTTCTTCTCTTCCTCCCATTCCCAAGAACGAGAACATGCTCCTGGATCCTCCATCTGACATGAAACGGTTAGTTGATAAGATAGTAGAGTTCATCATCAAGAATGGGAGGCAGTTTGAGACAGTACTTATGGAACAAGACCGAGCCCATGGAAGATTCCCATTTCTAATCCCATCTAACAAATTCCATCCATACTATTTAAAAGTTCTCCAGAAAACCCAGGAGTCAAAATTAACTGTCAAGAGTTTGCACAATGAGAAGGAAGATTTCAGAGGACATGCCTTGAACAAGAAAACGTCTGAAAGTTGTTTGATGGAATCTGATGATATACCACTTGATTCTGAAAGGAAAGAGAAGTTTAAGATGGTAATTAACAAGTCTAAAAAGGAAGGATCAGATTTGCCATCTAAAGCCGCACAACCACAACTTGGGGTCCAGGTGGATGCTGCTCAAGCAGCAGCTATTCTTCAGGCTGCTACAAGAGGCATTAAGCATCCAAATTTGGGGATTCTTTCAAATATGTCGCTGAATGGCAACACTTATGGGCCCAGAAGTGAGGGTGGGCAACCCTCTAATTCATCTCATGCTGCTAAAGAAGTTGCAAGTGAAGCCGATTCCTCTGAGGCACACTTGACTCAAGAGCAGAAGTTGAAGGCCGAGAGACTAAAACGGGCTAAGATGTTTGTGGCAATGCTGAAAAGTGGAGCTGCTCCATCGAAAACCGAACCCTCGCGTGGCTTATCAGCCGAGCCACAAGGATCAGGGGCTTCTTTAGGCGATGATAATCGGTTTGCAGCCAAAGAAAGAGAGAGGAGCACCGTCCTATCAGATTTTGACACGTCAGACAAAAAGACAAAATCGGAAAAGGAACATTTGGATGAAGAAAGACGAGCAAAGAGGAAATACCGAGCTAGATCTAGCAGAGACGAGGAAGGTGAAGCAGCAGAATCACAAGAAGATGAAGAAGAAGATGATGAGAGGGAAGGAAAAAGGTCAAGTAAACACCGTACGAAGAAACACTGTTCTCGTAATCATTCGGTTGAAGAAGAGTGTGAAGAAAGATATGGAGACGAGAGAGATTATAAGCATACAAAGAGAAGGCATCGGACTCATCGTAAACACGATGAAGAAAGGGATCATAAGCACTCGAGGAAGAAGAAGCATCGATCTTCTAGTTCTTATGAAGACGATGAACACGAAAGTGAAACTGAAAGGGTACATGAATATGCTAGAAAGAAGCATAGATCACACCATTCTTCACATGATGAAGAGTCTCATGATGAAGGGGAAAACGACCTTAAATATTCTACGAAAACGCGCTCTTCTCGTGGAGAAGATGAAGGAAAGGACAGACATTCTAGAAGGAAACATCGGTCTCATAAATCTTCTCATCATAGTAGAGATAAGCATAAGCATAGGAGAAGTTACTCGTCTAGGCATAAACAGAAGCCTGAGGTCTCTTCGGAAGAGGAGCTGAGGGACCATAATAAGACCGATAAGTATTCGGAAAGAGAAGAACTGGAAGAGGGGGAAATCAGCTCAAAGTTGTCGGGTCAGTCGAGGGGGCCTTTGGTTGATGTTGCTAGTAGAGAACCTTCGGTGGATGTATCAAGTTCTTATCAAGATCGGAGACCATTGACTCAACCGTCGGAGATAACCGACGTTCCTGATGATCTCAGGGCCAAAATCAGAGCAATGTTATTGTCCACAATGTAA 2688 44.79 MDIEIVGRHALLFDDDTTAAFVNSEDALVEWNSLLIDRYDVRHLLSTPPPSRRRRNPQTSHSSNADAEIDYERYLDLPSPSEEQEADAKPQPVGGFNAVPFSYGNFEAFNDQKTAETESECPGFHPPFPVPDSLVQNLPPTEKVHQIISRTALFVSKNGGQSEIVLRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQDLLQSKDNGQPENDEKTSNTENAAGAGAGALSLLGSLYGTGEDEDGGAEHASSSRECVSDVTIPLAAGNTMLPAGKDEPVSKPSLSSKEDTPILKRNSLTNALKAGRISSTRKGESLGSLSAVPDKLRASSLPPIPKNENMLLDPPSDMKRLVDKIVEFIIKNGRQFETVLMEQDRAHGRFPFLIPSNKFHPYYLKVLQKTQESKLTVKSLHNEKEDFRGHALNKKTSESCLMESDDIPLDSERKEKFKMVINKSKKEGSDLPSKAAQPQLGVQVDAAQAAAILQAATRGIKHPNLGILSNMSLNGNTYGPRSEGGQPSNSSHAAKEVASEADSSEAHLTQEQKLKAERLKRAKMFVAMLKSGAAPSKTEPSRGLSAEPQGSGASLGDDNRFAAKERERSTVLSDFDTSDKKTKSEKEHLDEERRAKRKYRARSSRDEEGEAAESQEDEEEDDEREGKRSSKHRTKKHCSRNHSVEEECEERYGDERDYKHTKRRHRTHRKHDEERDHKHSRKKKHRSSSSYEDDEHESETERVHEYARKKHRSHHSSHDEESHDEGENDLKYSTKTRSSRGEDEGKDRHSRRKHRSHKSSHHSRDKHKHRRSYSSRHKQKPEVSSEEELRDHNKTDKYSEREELEEGEISSKLSGQSRGPLVDVASREPSVDVSSSYQDRRPLTQPSEITDVPDDLRAKIRAMLLSTM 895
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00077 895 MobiDBLite consensus disorder prediction 713 733 - -
Sain12g00077 895 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 2 749 IPR040397 GO:0000395(PANTHER)
Sain12g00077 895 MobiDBLite consensus disorder prediction 200 219 - -
Sain12g00077 895 MobiDBLite consensus disorder prediction 51 65 - -
Sain12g00077 895 Pfam Alternative splicing regulator 2 86 IPR019147 -
Sain12g00077 895 SUPERFAMILY Surp module (SWAP domain) 327 395 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Sain12g00077 895 MobiDBLite consensus disorder prediction 856 872 - -
Sain12g00077 895 MobiDBLite consensus disorder prediction 45 70 - -
Sain12g00077 895 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Sain12g00077 895 Pfam Surp module 346 395 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Sain12g00077 895 SMART surpneu2 346 399 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Sain12g00077 895 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Sain12g00077 895 SMART DRY-EERY-2 1 107 IPR019147 -
Sain12g00077 895 MobiDBLite consensus disorder prediction 777 803 - -
Sain12g00077 895 Gene3D Surp module 334 403 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Sain12g00077 895 ProSiteProfiles SURP motif repeat profile. 348 390 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Sain12g00077 895 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Sain12g00077 895 MobiDBLite consensus disorder prediction 265 294 - -
Sain12g00077 895 MobiDBLite consensus disorder prediction 741 776 - -
Sain12g00077 895 MobiDBLite consensus disorder prediction 232 253 - -
Sain12g00077 895 MobiDBLite consensus disorder prediction 688 712 - -
Sain12g00077 895 MobiDBLite consensus disorder prediction 586 636 - -
Sain12g00077 895 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Sain12g00077 895 MobiDBLite consensus disorder prediction 804 836 - -
Sain12g00077 895 MobiDBLite consensus disorder prediction 666 687 - -
Sain12g00077 895 MobiDBLite consensus disorder prediction 503 524 - -
Sain12g00077 895 MobiDBLite consensus disorder prediction 503 536 - -
Sain12g00077 895 MobiDBLite consensus disorder prediction 558 878 - -
Sain12g00077 895 SUPERFAMILY Surp module (SWAP domain) 124 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00077 - -