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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00102 ATGGCATCCGCCTTTCTTTCAAGAACTCTCTTTGCAAATCGTCTTGTTTCATCATCATCTTTCGCTCTCAATCAAAACCCCCAAAAATTGGCCTCCCTTTTCTTTAAGAAGCCCCTCCAATCGTGGTTTTCCTCATCTCGTATGGCGTATATGAGTACTTCCTCAATTCGTAGTGACATGGCTTCAACCGGGGTTGGATCTACAACTACCTTTTCAACACACTCCGTGTCGACTAACGAGCCTGTTGTTTCAGTTGATTGGCTCCATGCCAATCTGCGTGAACCCGATATCAAGGTGTTGGATGCATCCTGGTACATGCCTGATGAACAGAGAAATCCACTTCAAGAGTATCAGGTTGCCCACATTCCTGGTGCTCTTTTCTTTGATGTAGATGGGATATCAGATCGAACCACCAATCTGCCACACATGTTGCCATCCGAAGAAGCATTTGCCGCTGCTGTTTCTGCTCTTGGTATTGAAAACAAAGATGGAGTTGTTGTTTATGATGGTAAAGGGATCTTCAGTGCCGCTCGTGTCTGGTGGATGTTCCGAGTTTTTGGACATGATAGAGTATGGGTATTAGATGGAGGCCTCCCCAGATGGCGTGCTTCGGGATTTGATGTTGAATCGAGTGCTTCTGGTGACGCAATATTGAAGGCCAGTGCTGCAAGTGAGGCAATAGAAAAAGTTTACCATGGCCAGGCTGTTGGTCCAGTTACATTTCTAACAAAATATCAGCCACATCTTGTATGGACACTTGAACAGGTTAAAAAGAATTTGGAGGAACAAACGCATCAACATATAGATGCCCGGTCAAAGGCCAGGTTTGATGGTGTTGCAGCCGAGCCTCGAAAAGGAATAAGAAGTGGCCATGTGCCCGGGAGTAAGTGCATTCCTTTTGCGCTGATGTTAGATGGCTCACAGACGCTACTATCTGCAGACCAGCTTAAGAAAAAGTTCGAACAAGAGGGAATCTCATTGGACAACCCTGTTATTACGTCATGCGGCACTGGAGTTACCGCATGCATTCTTGCATTGGGACTCCATCGACTTGGGAAGACCAATGTTCCAGTTTACGATGGATCTTGGACCGAATGGGGAGCACATGAGGATACTCCCGTCTCAACTTCAACTTCTTAA 1140 46.05 MASAFLSRTLFANRLVSSSSFALNQNPQKLASLFFKKPLQSWFSSSRMAYMSTSSIRSDMASTGVGSTTTFSTHSVSTNEPVVSVDWLHANLREPDIKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDRTTNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGFDVESSASGDAILKASAASEAIEKVYHGQAVGPVTFLTKYQPHLVWTLEQVKKNLEEQTHQHIDARSKARFDGVAAEPRKGIRSGHVPGSKCIPFALMLDGSQTLLSADQLKKKFEQEGISLDNPVITSCGTGVTACILALGLHRLGKTNVPVYDGSWTEWGAHEDTPVSTSTS 379
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00102 379 CDD TST-Repeat-1 82 205 - -
Sain12g00102 379 Gene3D - 75 216 IPR036873 -
Sain12g00102 379 PANTHER THIOSULFATE SULFERTANSFERASE 78 377 IPR045078 GO:0004792(PANTHER)|GO:0005739(PANTHER)|GO:0016783(InterPro)
Sain12g00102 379 Gene3D - 246 372 IPR036873 -
Sain12g00102 379 ProSiteProfiles Rhodanese domain profile. 93 210 IPR001763 -
Sain12g00102 379 SMART rhod-4 83 207 IPR001763 -
Sain12g00102 379 SMART rhod-4 251 372 IPR001763 -
Sain12g00102 379 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 254 377 IPR036873 -
Sain12g00102 379 Coils Coil 253 273 - -
Sain12g00102 379 ProSitePatterns Rhodanese signature 1. 117 128 IPR001307 GO:0004792(InterPro)
Sain12g00102 379 FunFam Sulfurtransferase 75 217 - -
Sain12g00102 379 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 80 211 IPR036873 -
Sain12g00102 379 CDD TST-Repeat-2 252 368 - -
Sain12g00102 379 ProSiteProfiles Rhodanese domain profile. 261 375 IPR001763 -
Sain12g00102 379 Pfam Rhodanese-like domain 252 368 IPR001763 -
Sain12g00102 379 Pfam Rhodanese-like domain 84 203 IPR001763 -
Sain12g00102 379 ProSitePatterns Rhodanese C-terminal signature. 356 366 IPR001307 GO:0004792(InterPro)
Sain12g00102 379 FunFam Sulfurtransferase 246 377 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00102 K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain2g01420 . 10 116 Sulfurtransferasese/Rhodanese gene family AT5G66040 51.724 3.72e-38 124.0
Sain3g03379 . 1 230 Sulfurtransferasese/Rhodanese gene family AT2G42220 65.652 6.43e-112 318.0
Sain3g04131 . 81 241 Sulfurtransferasese/Rhodanese gene family AT4G01050 42.683 1.87e-31 121.0
Sain4g02135 . 10 222 Sulfurtransferasese/Rhodanese gene family AT4G27700 68.837 3.44e-109 311.0
Sain6g00393 . 1 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 64.765 2.70e-138 390.0
Sain6g00395 . 1 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 64.765 2.70e-138 390.0
Sain6g01053 . 96 179 Sulfurtransferasese/Rhodanese gene family AT5G19370 34.021 2.38e-08 49.7
Sain6g01645 . 343 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 33.04 1.93e-20 89.4
Sain7g00140 . 47 216 Sulfurtransferasese/Rhodanese gene family AT5G55130 30.811 4.23e-13 69.3
Sain7g01219 . 33 383 Sulfurtransferasese/Rhodanese gene family AT5G23060 66.667 1.96e-165 468.0
Sain8g00914 . 82 464 Sulfurtransferasese/Rhodanese gene family AT2G40760 73.89 0.0 577.0
Sain8g03052 . 45 181 Sulfurtransferasese/Rhodanese gene family AT4G35770 61.314 1.29e-57 177.0
Sain9g00352 . 72 261 Sulfurtransferasese/Rhodanese gene family AT5G55130 24.424 1.59e-10 61.2
Sain9g02138 . 108 180 Sulfurtransferasese/Rhodanese gene family AT5G19370 33.766 5.30e-06 42.4
Sain10g00091 . 94 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 66.827 2.93e-103 302.0
Sain10g01865 . 3 145 Sulfurtransferasese/Rhodanese gene family AT5G03455 65.734 4.03e-70 206.0
Sain10g01866 . 3 145 Sulfurtransferasese/Rhodanese gene family AT5G03455 65.734 4.03e-70 206.0
Sain10g02181 . 147 348 Sulfurtransferasese/Rhodanese gene family AT5G23060 30.435 9.07e-20 89.7
Sain11g02367 . 26 144 Sulfurtransferasese/Rhodanese gene family AT2G17850 57.5 8.35e-46 144.0
Sain12g00102 . 1 377 Sulfurtransferasese/Rhodanese gene family AT1G79230 71.54 0.0 575.0
Sain12g01107 . 12 581 Sulfurtransferasese/Rhodanese gene family AT1G09280 65.541 0.0 799.0
Sain12g01832 . 31 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 61.143 7.29e-77 229.0
Sain14g01821 . 1 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 71.03 0.0 672.0
Sain10000370.1g00004 . 1 365 Sulfurtransferasese/Rhodanese gene family AT4G01050 60.484 1.63e-141 412.0
Sain10001232.1g00003 . 73 438 Sulfurtransferasese/Rhodanese gene family AT1G17850 63.807 2.24e-175 496.0