AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00107 ATGGGGAAGAAAAAACAGAAGCAGAAGGTGGTACTACCACCAGAGCTTCCCCCAGAGGTGCCTGAGGATGAAATTGAAGTTTCGGATGAGGACTTGGACTTTGTCAATAGAAACAAAGAGTATGCTGGCTTCGTATCAAAATTGGACACTCAGTCAATTACGAGGCATATCAATCGTGTGGCTGATGTGAAAGAAGATGCTCTGGAGTCTTTGTATGAGAAACGATCGAGGAAGAAATCATTAGCTACTGATAAGATTGAGGTTGAAGTTGATCCTGTAGATGCTCTCCCTGTGAAGACCTTAGATGGACAAGTCTACTACAGGACAGCACCGAAGGCCCCAAATAAGTTCCAGAATGCACGTGATGAGGACGAGACTGTGGGTGAAAATGAAGATGTAGGCAGAGACAACGGTGTTTTGAAGTTGACAAAAGCAGAAAAAAGGGCCAAGATTAAAAAACTGAGAAAAGAGGCCAAAAAACAAGGGAAGGAGGTGGTGGAAGTAGAGGAAGTGGAACAAAGCTCTCAAGCTGAAGTTTTGGCTGAGGTTGAAAAGGATATCTCAGCTGAAGAAGCCAATGAGAAGAGGAAGTTTAGGCTTGCTGAGCTCGGAACAGCAATGCTCACAGATCCAGAAGGCAATATTAAATCATTAAAAGAGATGCTTCAAATCTGTAAAGATGGAGATCAGGCTGTATCAATACTTGGTCTAAAGTCTTTGTTAGCTGTTTTCAAGGACATCATCCCTGGCAATCGCATTAGGCTACCTACTGAGAAGGAGCTAGCAATGGTTGTATCAAAGGATGTTAAGAAGACCCGATTCTATGAATCCACTCTCCTAACTGCGTACAAGGCATACCTCCAGAAGCTGATGGCATTGGAGAAAGTATCAAGTTTCAAGCGTGTGGCCATTCGCTGCATTTGTACTCTGCTAGAGGCAAACCCACGCTTCAATTTTCGTGAGAACTTGCTGGGAGTTGTCATGAATAATATTAGCTCCACAGATGATGTCATAAGGAGACTATGTTGCAGCACAATTAAGTCACTTTTCATAAACGAGGGAAAACATGGTGGTGAAGTTACTGTGGAAGCTGTTCAACTTATTGCTAATCTCGTAAAAGACCATGATTGTCATTTGCATCCTGATTCTGTTGAGGTTTTCTTGTCTCTCTCGTTTGATGAGGATCTTCGGAAGCCTGAAGTTGCAAAACCTAACCGTAAGTCGAAAAACAAAAAATATAAGATAGGGAATAGAAATGAGGATAAATTGCCAGCAAATGATAAAAAGAAGAACAAGCAGGAAATGATCTCAAAGACAAGAGAGGAGGTCAAAGCTGAGTTCATGGCTGCATCATTTGCCCAAGATGCAATGGAAAAGAGGAGGATACAGTCTGATACTCTTTCTTCTGTTTTCCAAACCTACTTTCGTATTTTAAAGCATGCCATGCGGCCAGGATCGGAAGCAAATGGATATCCAGCCGGTCCATTTGGGGAACATCCACTTCTTGCTCCATGTTTGAATGGAATTGGGAAATTCTCTCATCTGATCGATTTGGATTTCATGGCTGATCTCATGAACTACCTTAGAAGGCTTGCTGGAGGAAGTATTGATGCCAATCGTCCATCTGAGAATTTTTCAAGCCGTTTGACGGTTTCTGAACGATTAAGGTGTTGCATTGTCGCTTTCAAAGTGATGAAGAACAACCTTGATGCCTTAAACGTTGATTTACAAGACTTCTTCATTCAACTCTACAATCTCATACTTGAGTACAGGCCTGGAAGAGATCAAGGGGAAGTCTTGGCTGAAGCTATGAAGGTAATGTTATGTGATGATAGACAACATGACATGCAACGGGCTGCTGCTTTCATTAAACGTTTGGCTTCATTCTCTTTGTGCTTTGGAGCTTCGGAATCCATGGCTGCGTTGGTTACTTTAAAGCATCTCCTTCAGAAGAATGTGAAATGCCGCGATCTATTAGAAAATGATGCCGGAGGTGGATCACTTTCGGGTTCTATCGCGAAATATCAACCATATGCTTCAGATCCAAGCCTAAGTGGTGCATTTGCAACAGTTCTTTGGGAATTAACCCTTTTATCTAAACATTATCATCCATCTGTGTCAACAATGGCATCTGGGATTTCAACGATTACCAGTTCACACGATCAGGTTTATCGATCAAACGTCTCTCCTCAGCAGGCGTTCATCGACATGTCGCTTGACAAGGAGACGTTTACTCCAAAGACCGGTCAAAAGCAATATAACAACAAGCGGAAGAAGGGTATTCGGCAACCGTCGTTAGAGGTGGCTGGTGGTGGAGACACAGTGGACAAAGTGGCGGTGAGGACCAAACTCTCGGAACATTTCTTGCTCGTTCATGATATGGAAGAAAACGGGCGGTTAAGACGTGAACTGGAACGAACAAAATTGGGATTGCAACTTTATAAAGAGTATAAGAAGCAAAAGAAACAAAGAACCAGATAG 2481 42.6 MGKKKQKQKVVLPPELPPEVPEDEIEVSDEDLDFVNRNKEYAGFVSKLDTQSITRHINRVADVKEDALESLYEKRSRKKSLATDKIEVEVDPVDALPVKTLDGQVYYRTAPKAPNKFQNARDEDETVGENEDVGRDNGVLKLTKAEKRAKIKKLRKEAKKQGKEVVEVEEVEQSSQAEVLAEVEKDISAEEANEKRKFRLAELGTAMLTDPEGNIKSLKEMLQICKDGDQAVSILGLKSLLAVFKDIIPGNRIRLPTEKELAMVVSKDVKKTRFYESTLLTAYKAYLQKLMALEKVSSFKRVAIRCICTLLEANPRFNFRENLLGVVMNNISSTDDVIRRLCCSTIKSLFINEGKHGGEVTVEAVQLIANLVKDHDCHLHPDSVEVFLSLSFDEDLRKPEVAKPNRKSKNKKYKIGNRNEDKLPANDKKKNKQEMISKTREEVKAEFMAASFAQDAMEKRRIQSDTLSSVFQTYFRILKHAMRPGSEANGYPAGPFGEHPLLAPCLNGIGKFSHLIDLDFMADLMNYLRRLAGGSIDANRPSENFSSRLTVSERLRCCIVAFKVMKNNLDALNVDLQDFFIQLYNLILEYRPGRDQGEVLAEAMKVMLCDDRQHDMQRAAAFIKRLASFSLCFGASESMAALVTLKHLLQKNVKCRDLLENDAGGGSLSGSIAKYQPYASDPSLSGAFATVLWELTLLSKHYHPSVSTMASGISTITSSHDQVYRSNVSPQQAFIDMSLDKETFTPKTGQKQYNNKRKKGIRQPSLEVAGGGDTVDKVAVRTKLSEHFLLVHDMEENGRLRRELERTKLGLQLYKEYKKQKKQRTR 826
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00107 826 Coils Coil 144 171 - -
Sain12g00107 826 Gene3D - 216 475 IPR011989 -
Sain12g00107 826 MobiDBLite consensus disorder prediction 401 433 - -
Sain12g00107 826 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 4 763 IPR016903 GO:0003682(PANTHER)|GO:0005730(PANTHER)|GO:0006270(PANTHER)
Sain12g00107 826 MobiDBLite consensus disorder prediction 1 23 - -
Sain12g00107 826 Pfam CBF-Mak21 family 555 710 IPR005612 -
Sain12g00107 826 MobiDBLite consensus disorder prediction 414 433 - -
Sain12g00107 826 SUPERFAMILY ARM repeat 220 611 IPR016024 -
Sain12g00107 826 Pfam Nucleolar complex-associated protein 196 286 IPR011501 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00107 K14834 nucleolar complex protein 3
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain1g00211 . 4 534 Core DNA Replication Machinery family AT4G29910 61.878 0.0 647.0
Sain1g00627 . 2 349 Core DNA Replication Machinery family AT5G27740 34.53 2.23e-60 204.0
Sain1g00864 . 332 397 Core DNA Replication Machinery family AT5G08020 36.364 3.46e-08 47.0
Sain1g00912 . 1 774 Core DNA Replication Machinery family AT5G46280 68.354 0.0 1068.0
Sain1g01102 . 1 182 Core DNA Replication Machinery family AT3G55490 61.538 5.76e-83 241.0
Sain1g01257 . 1 272 Core DNA Replication Machinery family AT5G26680 27.437 1.23e-19 90.5
Sain1g01379 . 1 359 Core DNA Replication Machinery family AT5G26680 84.123 0.0 650.0
Sain2g00101 . 19 260 Core DNA Replication Machinery family AT5G26680 27.459 1.45e-18 86.7
Sain2g00389 . 153 393 Core DNA Replication Machinery family AT5G08020 28.807 3.29e-22 96.3
Sain2g01305 ACH 1 98 Core DNA Replication Machinery family AT4G19130 40.385 2.74e-17 73.9
Sain3g00006 . 337 574 Core DNA Replication Machinery family AT5G22010 24.415 6.11e-09 58.9
Sain3g00152 . 1 201 Core DNA Replication Machinery family AT1G80190 59.701 8.71e-88 255.0
Sain3g00531 . 1 847 Core DNA Replication Machinery family AT2G16440 73.66 0.0 1256.0
Sain3g00536 ACH 235 341 Core DNA Replication Machinery family AT4G14700 25.688 6.15e-08 50.4
Sain3g00640 . 200 472 Core DNA Replication Machinery family AT2G06510 23.875 1.86e-09 56.6
Sain3g02668 . 1 638 Core DNA Replication Machinery family AT2G06510 70.203 0.0 934.0
Sain3g03351 . 1 106 Core DNA Replication Machinery family AT4G18590 64.151 5.90e-50 152.0
Sain3g03689 . 424 532 Core DNA Replication Machinery family AT5G08020 55.046 3.45e-41 141.0
Sain3g03764 . 35 504 Core DNA Replication Machinery family AT1G07270 60.0 0.0 572.0
Sain3g04165 . 12 562 Core DNA Replication Machinery family AT2G31270 41.117 5.90e-109 336.0
Sain3g04427 . 76 164 Core DNA Replication Machinery family AT2G24490 30.841 6.96e-08 48.9
Sain4g00059 . 1 282 Core DNA Replication Machinery family AT1G26840 64.561 4.60e-127 362.0
Sain4g00380 . 1 443 Core DNA Replication Machinery family AT1G67320 68.584 0.0 665.0
Sain4g00638 . 1 148 Core DNA Replication Machinery family AT3G55490 56.757 1.74e-59 181.0
Sain4g00763 . 239 574 Core DNA Replication Machinery family AT2G06510 23.014 2.20e-13 70.9
Sain4g00883 . 956 1268 Core DNA Replication Machinery family AT1G08840 29.003 1.95e-19 94.7
Sain4g02458 . 1 318 Core DNA Replication Machinery family AT5G26680 27.628 1.67e-19 89.7
Sain4g02791 . 200 516 Core DNA Replication Machinery family AT2G06510 23.423 2.17e-09 57.0
Sain4g03244 . 1 318 Core DNA Replication Machinery family AT5G26680 27.928 1.31e-20 93.2
Sain4g03255 . 5 220 Core DNA Replication Machinery family AT5G49010 56.818 1.95e-86 253.0
Sain4g03261 . 271 337 Core DNA Replication Machinery family AT5G08020 49.254 5.64e-16 68.6
Sain5g00995 . 2 349 Core DNA Replication Machinery family AT5G27740 36.798 9.20e-78 252.0
Sain5g01155 . 91 776 Core DNA Replication Machinery family AT1G08130 37.83 1.05e-172 532.0
Sain6g00104 . 383 633 Core DNA Replication Machinery family AT4G19130 21.818 1.22e-09 58.5
Sain6g00650 . 12 361 Core DNA Replication Machinery family AT2G37560 65.527 6.07e-176 491.0
Sain6g00985 . 1 601 Core DNA Replication Machinery family AT5G08020 69.657 0.0 909.0
Sain6g01494 . 2 972 Core DNA Replication Machinery family AT1G77320 49.149 0.0 892.0
Sain6g01507 . 268 601 Core DNA Replication Machinery family AT5G08020 55.988 1.31e-140 409.0
Sain6g01742 . 1014 1267 Core DNA Replication Machinery family AT1G08840 30.451 7.56e-18 88.2
Sain7g00031 . 1 831 Core DNA Replication Machinery family AT5G44635 72.488 0.0 1260.0
Sain7g00143 . 1 255 Core DNA Replication Machinery family AT5G26680 25.882 1.05e-14 74.7
Sain7g00723 . 228 633 Core DNA Replication Machinery family AT4G19130 21.379 9.57e-15 75.5
Sain7g01650 . 3 287 Core DNA Replication Machinery family AT1G21690 25.987 3.79e-16 79.0
Sain7g02157 . 363 633 Core DNA Replication Machinery family AT4G19130 23.986 9.58e-12 65.1
Sain7g02279 . 1014 1289 Core DNA Replication Machinery family AT1G08840 30.363 5.32e-22 102.0
Sain8g00099 . 883 1294 Core DNA Replication Machinery family AT1G08840 28.274 1.62e-41 164.0
Sain8g00332 . 107 558 Core DNA Replication Machinery family AT2G31270 32.292 7.14e-44 160.0
Sain8g00342 . 1 124 Core DNA Replication Machinery family AT1G09815 54.032 9.27e-45 140.0
Sain8g00346 . 14 733 Core DNA Replication Machinery family AT5G16690 46.143 0.0 635.0
Sain8g00580 . 1 106 Core DNA Replication Machinery family AT4G18590 63.208 1.39e-49 151.0
Sain8g00582 . 1 106 Core DNA Replication Machinery family AT4G18590 63.208 1.39e-49 151.0
Sain8g01638 . 363 633 Core DNA Replication Machinery family AT4G19130 22.603 1.73e-09 57.8
Sain8g01971 . 1 339 Core DNA Replication Machinery family AT1G21690 78.761 0.0 561.0
Sain8g01980 . 207 337 Core DNA Replication Machinery family AT5G08020 60.305 7.19e-54 176.0
Sain9g00391 . 239 574 Core DNA Replication Machinery family AT2G06510 23.077 1.52e-13 70.9
Sain9g02118 . 17 396 Core DNA Replication Machinery family AT2G20980 52.645 7.61e-130 377.0
Sain9g02969 . 9 287 Core DNA Replication Machinery family AT1G21690 22.483 8.70e-13 68.9
Sain9g03074 . 1 1282 Core DNA Replication Machinery family AT1G08840 54.993 0.0 1404.0
Sain9g03596 . 182 944 Core DNA Replication Machinery family AT5G22010 68.687 0.0 1041.0
Sain9g03705 . 826 1288 Core DNA Replication Machinery family AT1G08840 31.214 1.39e-49 185.0
Sain10g00203 . 44 1095 Core DNA Replication Machinery family AT5G63960 83.538 0.0 1857.0
Sain10g00582 . 888 1282 Core DNA Replication Machinery family AT1G08840 30.787 7.26e-38 153.0
Sain10g00811 . 146 254 Core DNA Replication Machinery family AT5G08020 67.89 4.07e-51 168.0
Sain10g01215 . 1 451 Core DNA Replication Machinery family AT5G41880 64.333 0.0 632.0
Sain10g01593 . 376 454 Core DNA Replication Machinery family AT2G16440 50.633 1.67e-16 71.6
Sain10g01991 . 24 763 Core DNA Replication Machinery family AT3G09660 67.355 0.0 1016.0
Sain10g02648 . 1 2156 Core DNA Replication Machinery family AT1G08260 70.463 0.0 3179.0
Sain10g02922 . 1 332 Core DNA Replication Machinery family AT1G63160 90.964 0.0 623.0
Sain10g03085 . 1 417 Core DNA Replication Machinery family AT2G01120 64.508 0.0 565.0
Sain10g03562 ACH 1 838 Core DNA Replication Machinery family AT5G45400 51.395 0.0 803.0
Sain10g03688 . 4 620 Core DNA Replication Machinery family AT1G67630 56.361 0.0 694.0
Sain10g03775 . 20 928 Core DNA Replication Machinery family AT1G44900 76.982 0.0 1407.0
Sain10g03828 . 1 596 Core DNA Replication Machinery family AT3G25100 72.425 0.0 870.0
Sain10g03876 . 1 369 Core DNA Replication Machinery family AT1G77470 76.075 0.0 575.0
Sain10g04409 . 184 269 Core DNA Replication Machinery family AT1G77320 40.23 2.10e-12 64.7
Sain10g04415 . 182 601 Core DNA Replication Machinery family AT5G08020 59.048 0.0 541.0
Sain11g00708 . 1 209 Core DNA Replication Machinery family AT3G12530 60.287 4.36e-92 266.0
Sain11g01026 . 1 296 Core DNA Replication Machinery family AT2G25100 73.311 7.12e-169 468.0
Sain11g01315 . 1 354 Core DNA Replication Machinery family AT5G27740 87.006 0.0 656.0
Sain11g01419 . 17 809 Core DNA Replication Machinery family AT4G14700 62.217 0.0 988.0
Sain11g01738 . 141 251 Core DNA Replication Machinery family AT5G26680 37.838 7.09e-13 70.9
Sain11g01937 . 111 198 Core DNA Replication Machinery family AT4G02110 38.202 1.13e-13 72.0
Sain11g02011 . 11 1519 Core DNA Replication Machinery family AT5G67100 58.42 0.0 1754.0
Sain11g02479 . 1015 1267 Core DNA Replication Machinery family AT1G08840 28.519 1.19e-14 77.0
Sain11g02484 . 915 1267 Core DNA Replication Machinery family AT1G08840 28.421 2.67e-23 105.0
Sain11g02486 . 1011 1267 Core DNA Replication Machinery family AT1G08840 30.147 5.28e-20 94.7
Sain11g02489 . 1012 1267 Core DNA Replication Machinery family AT1G08840 31.387 6.43e-21 97.8
Sain11g03288 . 363 633 Core DNA Replication Machinery family AT4G19130 23.986 1.53e-11 64.3
Sain11g04249 . 18 526 Core DNA Replication Machinery family AT5G22110 68.359 0.0 731.0
Sain11g04759 . 13 322 Core DNA Replication Machinery family AT1G21690 24.179 1.34e-19 89.0
Sain12g00107 . 1 801 Core DNA Replication Machinery family AT1G79150 56.388 0.0 883.0
Sain12g00273 . 1 159 Core DNA Replication Machinery family AT3G25100 55.346 9.52e-51 168.0
Sain12g00621 ACH 245 341 Core DNA Replication Machinery family AT4G14700 32.323 3.76e-10 57.4
Sain12g01154 . 934 1289 Core DNA Replication Machinery family AT1G08840 25.124 6.93e-21 96.7
Sain12g01494 . 308 1083 Core DNA Replication Machinery family AT5G63960 28.337 6.27e-84 298.0
Sain13g01332 ACH 184 269 Core DNA Replication Machinery family AT1G77320 41.573 2.56e-12 67.8
Sain13g01845 . 14 640 Core DNA Replication Machinery family AT2G14050 72.214 0.0 943.0
Sain13g02205 ACH 245 341 Core DNA Replication Machinery family AT4G14700 32.323 4.33e-10 57.0
Sain13g02306 . 182 470 Core DNA Replication Machinery family AT5G08020 64.014 7.96e-138 404.0
Sain14g00003 . 3 223 Core DNA Replication Machinery family AT1G21690 24.691 1.80e-08 54.7
Sain14g00619 . 48 790 Core DNA Replication Machinery family AT1G08130 67.815 0.0 1049.0
Sain14g01093 . 200 538 Core DNA Replication Machinery family AT2G06510 22.715 2.44e-08 53.9
Sain14g01324 . 634 700 Core DNA Replication Machinery family AT5G16690 55.224 1.99e-14 64.7
Sain14g01516 . 247 334 Core DNA Replication Machinery family AT4G12620 26.136 2.24e-06 45.1
Sain14g01748 . 1 275 Core DNA Replication Machinery family AT2G24490 43.617 1.08e-76 233.0
Sain14g02428 . 245 337 Core DNA Replication Machinery family AT4G14700 31.183 4.12e-11 60.1
Sain15g00001 . 831 1269 Core DNA Replication Machinery family AT1G08840 26.105 4.04e-32 134.0
Sain15g00077 . 13 240 Core DNA Replication Machinery family AT1G21690 27.092 2.01e-12 68.2
Sain15g00665 . 1 439 Core DNA Replication Machinery family AT2G42120 76.993 0.0 717.0
Sain16g00074 . 228 633 Core DNA Replication Machinery family AT4G19130 20.137 7.12e-13 69.3
Sain16g00096 . 1 596 Core DNA Replication Machinery family AT3G25100 72.12 0.0 870.0
Sain16g00370 . 1053 1322 Core DNA Replication Machinery family AT4G02110 64.364 2.88e-117 394.0
Sain16g00965 . 184 269 Core DNA Replication Machinery family AT1G77320 36.842 1.15e-08 56.2
Sain16g00968 ACH 184 269 Core DNA Replication Machinery family AT1G77320 33.684 6.99e-09 56.6
Sain16g01032 . 406 778 Core DNA Replication Machinery family AT1G08130 27.073 5.79e-29 123.0
Sain16g01077 . 1 278 Core DNA Replication Machinery family AT3G02920 49.645 3.81e-92 272.0
Sain16g01305 . 170 393 Core DNA Replication Machinery family AT5G08020 21.145 6.60e-07 48.9
Sain16g01329 ACH 1 727 Core DNA Replication Machinery family AT2G07690 78.94 0.0 1183.0
Sain10000471.1g00002 . 1014 1294 Core DNA Replication Machinery family AT1G08840 30.169 6.13e-18 88.2
Sain10001192.1g00002 . 393 610 Core DNA Replication Machinery family AT5G22010 29.719 4.52e-16 81.6
Sain10001212.1g00003 . 1 716 Core DNA Replication Machinery family AT4G02060 84.078 0.0 1270.0