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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00136 ATGGCAGCCACAGTGATGTCCTCATTAAGCCTAAAGCCTTCTTCTGCATTCACCATTCAGACACCAGCCAAAGGCCTTCCTTCACTTGCCAGAACTTCCTTCAAGATTCAAGCCAGTGGCATCAAGAAGATCAAAACTGACAAGCCCTTTGGAATCGGAGGAGGAATGCAATTGAGAGATGGTAAAGATGCCAACGGAAGGAAGCCAACGGGGAAGGGAGTTTACCAGTTCGTTGACAAGTATGGTGCTAATGTTGATGGATACAGTCCCATCTACAACGAAGAAGAATGGTCTCCAAGCGGTGATGTCTATGTTGGTGGCACAACAGGATTGTTGATATGGGCTGTTACCTTGGCTGGAATTCTTGGAGGGGGTGCTCTTCTGGTTTACAGCACAAGTGCTTTGGCACAGTAA 414 47.34 MAATVMSSLSLKPSSAFTIQTPAKGLPSLARTSFKIQASGIKKIKTDKPFGIGGGMQLRDGKDANGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWSPSGDVYVGGTTGLLIWAVTLAGILGGGALLVYSTSALAQ 137
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00136 137 Pfam Photosystem II 10 kDa polypeptide PsbR 39 136 IPR006814 GO:0009523(InterPro)|GO:0009654(InterPro)|GO:0015979(InterPro)|GO:0042651(InterPro)
Sain12g00136 137 PANTHER PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC 1 137 IPR006814 GO:0009523(InterPro)|GO:0009654(InterPro)|GO:0015979(InterPro)|GO:0042651(InterPro)
Sain12g00136 137 MobiDBLite consensus disorder prediction 49 70 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00136 K03541 photosystem II 10kDa protein