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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00141 ATGGGTACATGTTATTCCTCCACCGGCGACGGCGGCCGGAGAGATAGAAAATACGGTGGCGGTGAAGATGAAGATGATGAAAGTGATAGATGGTGGAAGTCCATAAGTGGTAGGAAGATCAATCGTAAACCCACCGATTTGAAGTTCAAATTTGGTGGCGGCGGCCGTCGCCGGGGTTCTGCGGCGGAGGAACGCGCTCTCCACCAGGTTCCCGGTAGGATTTCCGGTAATGGGTCCAGTAGCATCGCCAGTTTACACACGCAGCAAGGCAAGAAAGGGACGAATCAAGACGCCATGATCGTCTGGGAGAAATTCAATTCAACGAACGAGGCGGTGTTTTGTGGAGTTTTTGACGGGCATGGTCCTTACGGACATATGGTTGCTCGGAAAATTAGGGACTCCCTACCCGTTTTATTGTCCGCCCATTGGAAAACTACTTCAGATAGCGAAAATGGAAATTCCAATGGAAACATGCACGATGAAGAAGAAGACGAAGAAGAAGATAATTGGTGTCAAGAATCGGAAGTCGGGGAGAAAGAACGAGTACCCGAGAAGTATCTTTCACTTAAAAAGTCGATATTGAAAGCTTTTAGGTTAATGGATATGGAACTTAAGACGCATCCATCGATCGATTGTTTTTGCAGCGGATCAACTGCGGTCGCTTTGATCAAGCAGGCTCAAGATCTTATAATTGGAAATCTCGGAGACTCGAGAGCGGTGTTGGCAACGAGAGACAATGACAATGCTTTAGTCGCAGTTCAATTGACCGTTGATTTGAAACCCAATCTCCCAAGAGAAGCAGCTCGGATTCAGCAGTTCAAAGGACGGGTGTTTGCATTGCAAGACGAGCCGGAGGTTGCACGTGTGTGGTTGCCCAATAGCGATTCTCCTGGTTTGGCAATGGCTCGAGCTTTTGGGGACTTTTGTCTAAAGGATTTCGGTTTAATTTCCGTCCCAGATGTTTATTACCACCGTATCACCGATAAAGACAAGTTTGTCGTTCTTGCAACCGACGGGGTATGGGATGTGCTCTCAAATAAAGAAGCCGTGGACATCGTGGCAGCCGCCCCTAGCCGCTCAACCGCCGCCAGAGCACTTGTCGATTGTGCCACAAGGGCATGGCGGCTCAAATATCCCACATCCAAAAACGACGATTGTGCTGCCGTATGCCTATTTCTTGATCCAAAACCCGTGCCCGATTCACAAAAGTTGGAAATCAAAGAACCCAATATTAGTATGGTTCCGCACGAGCCTGCAACTAATCCAACGGTTCTTGAGCATTCAGGCACCGTTAAAGATTCAAGCGAGATTGTGCCATTTGTCGAACCACAAGAAAGCAAATTACCTGAAAAGGGTGTTGGCGGTTCGAAACGGAGTCTAGCCGAGTGCATAACGAGTACTGAAGATGAAGAATGGTCGGCTCTCGAGGGTGTGACTCGGGTCAATAGTCTGTTAAGCATTCCAAGATTATTGACTGGTGAGAAAAGATCAAATAGTTCAAGAAAATCTGTCATCAAGATCTGA 1524 47.57 MGTCYSSTGDGGRRDRKYGGGEDEDDESDRWWKSISGRKINRKPTDLKFKFGGGGRRRGSAAEERALHQVPGRISGNGSSSIASLHTQQGKKGTNQDAMIVWEKFNSTNEAVFCGVFDGHGPYGHMVARKIRDSLPVLLSAHWKTTSDSENGNSNGNMHDEEEDEEEDNWCQESEVGEKERVPEKYLSLKKSILKAFRLMDMELKTHPSIDCFCSGSTAVALIKQAQDLIIGNLGDSRAVLATRDNDNALVAVQLTVDLKPNLPREAARIQQFKGRVFALQDEPEVARVWLPNSDSPGLAMARAFGDFCLKDFGLISVPDVYYHRITDKDKFVVLATDGVWDVLSNKEAVDIVAAAPSRSTAARALVDCATRAWRLKYPTSKNDDCAAVCLFLDPKPVPDSQKLEIKEPNISMVPHEPATNPTVLEHSGTVKDSSEIVPFVEPQESKLPEKGVGGSKRSLAECITSTEDEEWSALEGVTRVNSLLSIPRLLTGEKRSNSSRKSVIKI 507
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00141 507 MobiDBLite consensus disorder prediction 73 91 - -
Sain12g00141 507 PANTHER PROTEIN PHOSPHATASE 65 392 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sain12g00141 507 SMART PP2C-4 72 391 IPR001932 -
Sain12g00141 507 CDD PP2Cc 82 393 IPR001932 -
Sain12g00141 507 Gene3D - 79 397 IPR036457 -
Sain12g00141 507 FunFam probable protein phosphatase 2C 33 77 396 - -
Sain12g00141 507 Pfam Protein phosphatase 2C 89 370 IPR001932 -
Sain12g00141 507 MobiDBLite consensus disorder prediction 71 91 - -
Sain12g00141 507 ProSiteProfiles PPM-type phosphatase domain profile. 82 393 IPR001932 -
Sain12g00141 507 SUPERFAMILY PP2C-like 79 395 IPR036457 -
Sain12g00141 507 MobiDBLite consensus disorder prediction 146 169 - -
Sain12g00141 507 MobiDBLite consensus disorder prediction 1 30 - -
Sain12g00141 507 MobiDBLite consensus disorder prediction 10 30 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00141 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138641 Sain12g00141 Sain13g02690
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:2481689 Sain8g00165 Sain-Chr8:2756267 dispersed
Sain Sain-Chr12:2481689 Sain13g02690 Sain-Chr13:139046415 wgd
Sain Sain-Chr12:2481689 Sain8g00592 Sain-Chr8:15985652 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain2g00889 . 1 316 PP2C-type Phosphatase gene family AT4G32950 50.15 6.90e-104 305.0
Sain2g01059 ACH 1 347 PP2C-type Phosphatase gene family AT3G06270 65.634 2.86e-167 468.0
Sain2g01078 ACH 1 346 PP2C-type Phosphatase gene family AT4G31860 77.168 0.0 588.0
Sain2g01195 . 6 493 PP2C-type Phosphatase gene family AT3G16560 64.329 0.0 595.0
Sain2g01599 ACH 1 350 PP2C-type Phosphatase gene family AT3G05640 54.52 1.72e-138 397.0
Sain2g01893 . 1 783 PP2C-type Phosphatase gene family AT2G35350 57.583 0.0 813.0
Sain3g00089 . 1 289 PP2C-type Phosphatase gene family AT3G15260 76.125 7.47e-164 454.0
Sain3g00285 . 72 511 PP2C-type Phosphatase gene family AT1G72770 57.174 5.36e-176 503.0
Sain3g00784 ACH 1 370 PP2C-type Phosphatase gene family AT4G33920 69.272 0.0 520.0
Sain3g00963 . 1 282 PP2C-type Phosphatase gene family AT1G34750 71.986 3.40e-151 422.0
Sain3g02176 ACH 72 389 PP2C-type Phosphatase gene family AT2G25620 56.875 3.80e-128 371.0
Sain3g02840 . 1 658 PP2C-type Phosphatase gene family AT2G40860 67.223 0.0 923.0
Sain3g03502 . 204 291 PP2C-type Phosphatase gene family AT1G07430 65.909 8.26e-37 126.0
Sain3g03505 . 76 362 PP2C-type Phosphatase gene family AT2G29380 69.728 7.73e-149 424.0
Sain3g03574 ACH 1 654 PP2C-type Phosphatase gene family AT2G28890 66.381 0.0 878.0
Sain3g03798 . 4 376 PP2C-type Phosphatase gene family AT1G07160 56.283 7.53e-130 375.0
Sain3g04435 ACH 30 1035 PP2C-type Phosphatase gene family AT3G63340 52.033 0.0 1069.0
Sain4g00255 . 66 444 PP2C-type Phosphatase gene family AT1G67820 45.408 9.59e-106 316.0
Sain4g00877 . 39 741 PP2C-type Phosphatase gene family AT1G75010 44.399 0.0 586.0
Sain4g01109 . 10 378 PP2C-type Phosphatase gene family AT2G33700 69.415 0.0 529.0
Sain4g01897 . 107 285 PP2C-type Phosphatase gene family AT5G51760 49.162 1.81e-54 179.0
Sain4g02074 . 1 398 PP2C-type Phosphatase gene family AT5G53140 65.664 0.0 519.0
Sain4g03110 ACH 23 461 PP2C-type Phosphatase gene family AT1G03590 68.958 0.0 607.0
Sain5g00051 . 15 361 PP2C-type Phosphatase gene family AT3G51470 68.539 5.02e-180 503.0
Sain5g00837 ACH 1 384 PP2C-type Phosphatase gene family AT5G66080 73.177 0.0 592.0
Sain5g00853 . 204 293 PP2C-type Phosphatase gene family AT5G19280 31.868 6.28e-06 46.6
Sain6g00047 . 1 511 PP2C-type Phosphatase gene family AT1G72770 48.356 3.14e-159 457.0
Sain6g00509 ACH 1 354 PP2C-type Phosphatase gene family AT4G31860 72.702 0.0 553.0
Sain6g00642 ACH 2 428 PP2C-type Phosphatase gene family AT1G47380 76.977 0.0 692.0
Sain6g01287 . 95 369 PP2C-type Phosphatase gene family AT1G43900 73.455 1.01e-152 432.0
Sain7g00846 ACH 2 416 PP2C-type Phosphatase gene family AT1G47380 77.59 0.0 672.0
Sain7g02168 . 1 511 PP2C-type Phosphatase gene family AT1G72770 51.631 8.99e-171 488.0
Sain8g00165 . 1 490 PP2C-type Phosphatase gene family AT3G02750 62.118 0.0 592.0
Sain8g00592 . 17 413 PP2C-type Phosphatase gene family AT5G51760 44.963 3.96e-100 301.0
Sain8g00864 . 81 361 PP2C-type Phosphatase gene family AT2G29380 52.069 2.40e-89 271.0
Sain8g01112 . 108 435 PP2C-type Phosphatase gene family AT1G07430 63.253 7.04e-146 421.0
Sain8g01243 . 5 377 PP2C-type Phosphatase gene family AT3G12620 68.365 0.0 536.0
Sain8g03044 ACH 1 378 PP2C-type Phosphatase gene family AT3G51370 76.963 0.0 624.0
Sain9g00254 ACH 1 344 PP2C-type Phosphatase gene family AT4G31860 74.709 0.0 556.0
Sain9g00954 ACH 1 428 PP2C-type Phosphatase gene family AT1G47380 76.102 0.0 676.0
Sain9g01807 . 1 282 PP2C-type Phosphatase gene family AT1G34750 73.759 1.39e-158 441.0
Sain9g02092 . 1 397 PP2C-type Phosphatase gene family AT4G38520 72.796 0.0 626.0
Sain9g02295 . 3 283 PP2C-type Phosphatase gene family AT4G28400 70.423 7.46e-142 399.0
Sain9g04204 ACH 10 436 PP2C-type Phosphatase gene family AT1G68410 76.69 0.0 655.0
Sain10g00458 . 1 383 PP2C-type Phosphatase gene family AT3G62260 53.47 1.61e-132 383.0
Sain10g00546 . 1 783 PP2C-type Phosphatase gene family AT2G35350 57.497 0.0 807.0
Sain10g00976 ACH 1 347 PP2C-type Phosphatase gene family AT3G06270 68.466 2.09e-172 486.0
Sain10g01998 . 6 380 PP2C-type Phosphatase gene family AT3G12620 70.976 0.0 553.0
Sain10g01999 ACH 6 186 PP2C-type Phosphatase gene family AT3G12620 63.243 3.83e-81 244.0
Sain10g04029 ACH 1 461 PP2C-type Phosphatase gene family AT1G03590 65.208 0.0 593.0
Sain10g04725 ACH 11 435 PP2C-type Phosphatase gene family AT1G68410 78.873 0.0 683.0
Sain10g05460 . 11 390 PP2C-type Phosphatase gene family AT2G25620 65.707 0.0 511.0
Sain11g00057 . 1 388 PP2C-type Phosphatase gene family AT4G27800 58.04 1.15e-167 473.0
Sain11g00093 . 1 369 PP2C-type Phosphatase gene family AT5G53140 63.957 7.62e-173 486.0
Sain11g00504 . 1 395 PP2C-type Phosphatase gene family AT2G30020 57.468 2.63e-144 412.0
Sain11g00678 . 120 435 PP2C-type Phosphatase gene family AT1G07430 63.091 6.59e-144 415.0
Sain11g02075 . 1 371 PP2C-type Phosphatase gene family AT4G33920 64.908 4.96e-178 498.0
Sain11g02378 ACH 1 378 PP2C-type Phosphatase gene family AT3G51370 74.084 0.0 601.0
Sain11g02430 . 10 361 PP2C-type Phosphatase gene family AT3G51470 66.391 2.21e-170 478.0
Sain11g04258 . 1 490 PP2C-type Phosphatase gene family AT3G02750 61.866 0.0 587.0
Sain12g00141 ACH 1 489 PP2C-type Phosphatase gene family AT1G16220 56.641 0.0 558.0
Sain12g01080 . 1 281 PP2C-type Phosphatase gene family AT1G34750 72.954 8.05e-155 431.0
Sain12g01349 . 8 420 PP2C-type Phosphatase gene family AT1G09160 75.303 0.0 631.0
Sain12g01355 ACH 1 353 PP2C-type Phosphatase gene family AT5G27930 66.384 0.0 512.0
Sain12g01808 . 58 216 PP2C-type Phosphatase gene family AT5G36250 38.994 1.70e-30 113.0
Sain13g00121 . 129 427 PP2C-type Phosphatase gene family AT4G26080 51.623 4.21e-101 304.0
Sain13g00401 ACH 58 389 PP2C-type Phosphatase gene family AT2G25620 53.913 4.69e-128 371.0
Sain13g01260 . 1 511 PP2C-type Phosphatase gene family AT1G72770 54.247 7.82e-174 496.0
Sain13g01420 . 1 282 PP2C-type Phosphatase gene family AT4G28400 62.898 2.97e-128 364.0
Sain13g01609 . 1 293 PP2C-type Phosphatase gene family AT4G31750 81.911 1.70e-177 490.0
Sain13g01908 . 1 395 PP2C-type Phosphatase gene family AT2G30020 57.468 8.20e-143 409.0
Sain13g01976 ACH 1 369 PP2C-type Phosphatase gene family AT4G33920 68.919 0.0 517.0
Sain13g02690 ACH 1 489 PP2C-type Phosphatase gene family AT1G16220 57.52 0.0 546.0
Sain14g00035 . 1 384 PP2C-type Phosphatase gene family AT3G17090 69.767 0.0 534.0
Sain14g00386 ACH 10 377 PP2C-type Phosphatase gene family AT3G12620 66.486 0.0 511.0
Sain15g00667 ACH 1 389 PP2C-type Phosphatase gene family AT5G06750 61.183 9.74e-176 493.0
Sain15g00749 ACH 147 361 PP2C-type Phosphatase gene family AT1G75010 22.831 1.19e-06 49.3
Sain15g00875 ACH 1 654 PP2C-type Phosphatase gene family AT2G28890 63.948 0.0 837.0
Sain15g00996 . 3 395 PP2C-type Phosphatase gene family AT2G30020 59.148 2.65e-145 415.0
Sain15g01037 . 65 267 PP2C-type Phosphatase gene family AT1G34750 24.645 4.60e-06 45.4
Sain15g01433 ACH 36 445 PP2C-type Phosphatase gene family AT3G63340 36.19 5.42e-76 251.0
Sain16g00696 . 44 389 PP2C-type Phosphatase gene family AT5G06750 48.011 4.79e-113 334.0
Sain16g00838 ACH 1 654 PP2C-type Phosphatase gene family AT2G28890 63.343 0.0 857.0
Sain16g00889 . 1 361 PP2C-type Phosphatase gene family AT2G29380 54.902 8.73e-146 417.0
Sain16g01653 . 1 1094 PP2C-type Phosphatase gene family AT2G20050 68.235 0.0 1494.0
Sain16g02041 . 1 288 PP2C-type Phosphatase gene family AT5G01700 57.047 2.97e-123 359.0
Sain16g02304 . 26 579 PP2C-type Phosphatase gene family AT5G19280 54.676 0.0 601.0