AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00153 ATGATATCCATTGATGATGGTCATCCACCACCAGATCCTTCATCATCCCATCATCACCATCTCAACATCAACACTGATGATGATTATAAGCCTTCTGCTTCTGTTTCTAATTCAGATCTGAAGTTTCCAGATGCTGATCTTGATGACACCAACACCAACAACCCACTTCCCAATTTCTCTATAAGGGATCATGTTTTCGGTTTAAGAAGCAAAGATGTTGCGTGTAATTGGCCGTTTTCTTCGCAAAGTTTTCAACTTTGTTTGAGAAATGGAGTGAAGAACTTGTTGCCACCTTTCCAGCCTCTTGATTTACTGAGAAATAAGAACTCATCTATCACCAAATGCAATCTTGAAACCCGTTTGGCCTGCAACGAAGAACTCGTGACCCGTTTCGATGGGAAACCCACCGAAAACCGATTCAAACCCGTTATTTCCGATGCTGCCAAATCAAACCAAGAGCTACCCGTGAGGTCTATAAGCGTAAATTCAAGTGGGTCGAAAGAAAATAAAGAATCCAACACGAGATCGAAGGAAAAACCTTTGAAAAAGAGTAGATTGGTTATGAAACTGAATTCTGGCGTTGACCCGGTTGACCAATTAGATCTCGCTCCAAACAGTTTCATCGTTTCCGAAACCATGGCGTCGAAAATCTGCCCGGTTTGCAAGATTTTCTCGTCGTCTTCAAACACGACCCTAAACGCTCATATCGACCAGTGTCTAACGGGGGAAGCGAGTATGAAGTGGACCGATAATTCGAAGGTTAATATAGTCAAACATAGGGTCAAACCTAGGAAAACAAGATTAATGTCGGATATATACGAAACGGCCCCACATTGTACTGTCGAAGAGCTCGATAGGAGAAACGGTACGAGTTGGGCTACGAATTCGAGTTTTCCTGCTCAAGAATTCGAGTTTCAAGAAGAGAAAGAAGAGCCAAGATTAACGGCTACGATCAATCCTGAAGTTGCGGATAACGAAGGTGATGTTTATATCGACACCGATGGCACAAAAGTTCGGGTTTTGTCGGTGCCGAAAGCGTGTTCATCGGATAACAATGGAGCTCGGAAGTTACTGAAAGGCGTAAAAGGTTGTAAAATCGTTATCGGTAAGAAAAAACACAATCTTTTTAAGGCGAAACATCATCAAAAGTATCTGAAACTTGGATCGAACGCCGCAAAATTACGCTCACCAAAGCCTTCGAACGCCCGTTATGCTTCTGAGATTGTTGATGAACAGATAAGTGGGCAGGAAGAAGGTGTTGCCATGGCGGAAAGTTGCGGGAAAGAGGAAGGAGGCAGAGAGCCGATGAAAGCTCGGATGGATATTGAAGTGGCAGGTTTGGCCATCGTAAGGCCGCCATGGGCGTGCTCGAAGAGAACCCGCCTTAACGGCAAGCGGCGGCAGCTCGGGCTACCGAATGACCCAAGAAGAGATTTTCTTGTTGAAAGTGATAAAACTTCTCCATCTTCACAAATTCGGAAGAAAACTAGAACTTTATCACCATTAACGAACCCAAGTTCAAACCTTTTGAGAAAAGACGACACCTTTACGGAGGGTTCTCAAGATTCGTATCCCATTCAGCACTCTGATGGTCCTGATATCAGACCGATCGTGAAAAACAGCAAGTTTTCGTCTTTACAAAAGAATCTGTCTTTTTCAGCAGCCAAGACTAGTTCGAAACGAAAATTTTCAGCTTTCCAGAAATCTTATCTCCATTGCTTACTGAAAGAAAAATCTGTTGAGGGGCAGTCTCGGAATTCTCCAAACGAGCAATCTCGAATGGAAAAAGACGACACCTTTACGCTTAACGATTCAGAGGGTTCTCAAGATTTGTATCCTATTCAGCACTCCAATGGTCCAGATATCAGACCGATCAAGAACACCAAGTTTTTGTCTTTTAAAAAGAATCCATCTTTTTCAGCACCCAAGATTAGTTCCAAACGAAAACTTTCCGCTTTCCAGAAATCTTATCTCCGTTGCTTACGGAACGAAAAATCTGTTGAGGGGCAGTCTCAGAATTCTCCAAACGAGCAATCTCGAATGGAAGACGACACCTTTACGCTTAACGATTCAGAGGGTTCTCAAGATTCGTATCCGATTCAGCACTCCGATGGTCCCGATATCAGCCCAATCAAGAACACCAAGTTTTCCTCTTTTAAAAATAATCCATCTTTTTCAGCACCCAAGACTAGTTCCAAACGAAAACTTTCCGCTTTCCAGAAATCTTATATCCGTTGCTTACTGAATGAAAAATCTGTTGAGGGGCAGTCTCGTAATTCTCCAAACGAGCAATCTCGAATGGAAGAAGACACGGATTCCACCAGAAAAGAGAGTTCAAATGGAGAATCTTCTGAGGATGAAGGTTTGATGGGTTTGAGCAATTCCTTCGATCCCGAGTTCTCTAAACTGGTGGCTGAACCCAATAAGCCATATGATCAAGATCAGATATGTTCCACTAATCGCGCTCCCGATGGGAAAAACATATTCGGAAACGATATCGAATTAGATGACACAGAGGATATCGAAAAGCATCAAGATTACTTTCAGGAGGTTGACCATATTGACCCGATTCCGATTCCGGGCCCGCCAGGATCTTTCTTGCCTAGCCCCGGTGGAGATATGGTTTCCGAAGAGATACAACCAATTCGGGTTCCGCCAACCGAAAACCCACATAACCACGACACAATAGATCAAGATTCCATGTCGAATTCTCCAGTTTCAACGGTTTCTAACCCCAGTTTAGTAAGATCAGATTCAAGATCTTCAGAAAAGTTATCTTTCAGATCTAGTTCTGTTCAAGATGATCAAAGACCCGGTTTTTCTGGGTTTTTGATAGAACCCACATTCAAGAAATCTTTCCCCGTTGATCATATCGAAAAGGGTCCAAATCCGACCAATTTCAAGAACGATCAGCCGTGTTGTTGCTCTAGAAAAGAATCGGCTTTATCGTATTCAGCTGCTTCAAGCTATCAAGATTCGTCGCTTTTAAGGAAACAACAACCCACCGAGTCAACCAGGAATCCAAACGGGTTTATAAACTTCAGATCCGAGTCAATGTTCTTGCTAAACAACTACCCAACTTCACAACCACCCGACACCACCAAGATATCGGTTCAGCCAACTGGTTCAGCCGTTAAGTTACCGATTTACAGCGATTGTGACTCCGCCGCTAGTCCTTCGAAACCCGTTCTTCGACTAATGGGAAAAAACTTAACCGTGGTCAAGACCGATGAAGACGTATCATCAACTCATCAATTTAGATCTCCCACGAGTCAACTCGTTCGAAATGATCCAAAAGAAGACCATAATTCTTTTTCCCAAAACTACCTTCACCGGCCGGTGGTCTTTAGCCAGTACCAACATGGGTCCGAGTCTAACCATTTCAACGGCCAACCACCGATAAATATGAGAAGTTTCATTGCGGCAACGGCGGCGGCTCATGGTGGTTCGAACTTGGGTCCGATGGTACCTCCGGCGAGGTCCCACTACGGCTATAATGGAGTCAATTCTCAAATGCCACGTGGAAGAAATATGTACAATTCTGTAACGAGCTCGAATCCGATTAAAGAGATTATCGTCATTGATGATTCTTCCCCTGAAAATGAAGCTGCTGATTCCATGAGTAATGAATTCTTGAGAAGAAATTCTTCAGGGCAGATGAATCAGTTTTACTCAATGTACCAGTCACAGGGTTATGATCATCATCATCATCATCATCCCTACTGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGCGGTCCGGCGGTGTTTCGTGGTGGCGGTTATCAAACTTCTTTGGGTATGCAAATGGGATCATCATCACCATCGAATTCAACATCTCATTTGCGATCTTCAACTTCATACTATCCTCCAAGCTATCCATGA 3888 43.72 MISIDDGHPPPDPSSSHHHHLNINTDDDYKPSASVSNSDLKFPDADLDDTNTNNPLPNFSIRDHVFGLRSKDVACNWPFSSQSFQLCLRNGVKNLLPPFQPLDLLRNKNSSITKCNLETRLACNEELVTRFDGKPTENRFKPVISDAAKSNQELPVRSISVNSSGSKENKESNTRSKEKPLKKSRLVMKLNSGVDPVDQLDLAPNSFIVSETMASKICPVCKIFSSSSNTTLNAHIDQCLTGEASMKWTDNSKVNIVKHRVKPRKTRLMSDIYETAPHCTVEELDRRNGTSWATNSSFPAQEFEFQEEKEEPRLTATINPEVADNEGDVYIDTDGTKVRVLSVPKACSSDNNGARKLLKGVKGCKIVIGKKKHNLFKAKHHQKYLKLGSNAAKLRSPKPSNARYASEIVDEQISGQEEGVAMAESCGKEEGGREPMKARMDIEVAGLAIVRPPWACSKRTRLNGKRRQLGLPNDPRRDFLVESDKTSPSSQIRKKTRTLSPLTNPSSNLLRKDDTFTEGSQDSYPIQHSDGPDIRPIVKNSKFSSLQKNLSFSAAKTSSKRKFSAFQKSYLHCLLKEKSVEGQSRNSPNEQSRMEKDDTFTLNDSEGSQDLYPIQHSNGPDIRPIKNTKFLSFKKNPSFSAPKISSKRKLSAFQKSYLRCLRNEKSVEGQSQNSPNEQSRMEDDTFTLNDSEGSQDSYPIQHSDGPDISPIKNTKFSSFKNNPSFSAPKTSSKRKLSAFQKSYIRCLLNEKSVEGQSRNSPNEQSRMEEDTDSTRKESSNGESSEDEGLMGLSNSFDPEFSKLVAEPNKPYDQDQICSTNRAPDGKNIFGNDIELDDTEDIEKHQDYFQEVDHIDPIPIPGPPGSFLPSPGGDMVSEEIQPIRVPPTENPHNHDTIDQDSMSNSPVSTVSNPSLVRSDSRSSEKLSFRSSSVQDDQRPGFSGFLIEPTFKKSFPVDHIEKGPNPTNFKNDQPCCCSRKESALSYSAASSYQDSSLLRKQQPTESTRNPNGFINFRSESMFLLNNYPTSQPPDTTKISVQPTGSAVKLPIYSDCDSAASPSKPVLRLMGKNLTVVKTDEDVSSTHQFRSPTSQLVRNDPKEDHNSFSQNYLHRPVVFSQYQHGSESNHFNGQPPINMRSFIAATAAAHGGSNLGPMVPPARSHYGYNGVNSQMPRGRNMYNSVTSSNPIKEIIVIDDSSPENEAADSMSNEFLRRNSSGQMNQFYSMYQSQGYDHHHHHHPYCGGGGGGGGGGGGPAVFRGGGYQTSLGMQMGSSSPSNSTSHLRSSTSYYPPSYP 1295
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00153 1295 MobiDBLite consensus disorder prediction 896 937 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 1 53 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 492 527 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 155 183 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 750 795 - -
Sain12g00153 1295 ProSitePatterns DNA polymerase family B signature. 330 338 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Sain12g00153 1295 MobiDBLite consensus disorder prediction 990 1010 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 470 491 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 883 940 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 465 536 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 579 625 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 664 733 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 11 26 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 665 733 - -
Sain12g00153 1295 PANTHER HAPLESS PROTEIN 7 1237 - -
Sain12g00153 1295 Gene3D Classic Zinc Finger 217 243 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 763 783 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 807 830 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 155 169 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 1246 1295 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 1082 1103 - -
Sain12g00153 1295 MobiDBLite consensus disorder prediction 1266 1295 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00153 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138643 Sain12g00153 Sain13g02684
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:2793291 Sain13g02684 Sain-Chr13:138955222 wgd