AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00167 ATGAGCTGGTGGCGATCGGGATTCGTCGGCGTTGCAAGGAAAAAATTCGAGGACAACAATCCATCACGCAAATACCAGAAATTCGCCCTAATAATCGGAGTCACCGGCATCGTCGGAAACAGCCTCGCCGAGATCCTCCCCCTCCACGACACCCCCGGCGGTCCATGGAAAGTCTACGGCGTCGCTCGCCGCCCACAACCACCATGGAACGCCGATTACCCCATTGACTACATCCAATGCGACATAACCGATCCCGACCAAACCCAATCCAAACTCTCAACCCTAACAGACCTAACCCACCTTTTCTACGTCACGTGGGCCAATTCCGCCACCGAATCCGAAAACTGCGACATTAACGGCAAAATGTTCACCAACGTCCTTAACGCCGTTATCCCAAACGCCCCAAATTTACAACACGTATGCTTACAAACGGGTCGTAAACATTACATCGGGTCGTTCGAAGATCTAGCGAAAAACCCGGTTCACGATCCTCCTTTTTACGAGGATCTTCCACGGCTCGATTCGCCTAATTTCTACTACACACTTGAAGATATTTTATTCAAAGAAGTCGGAAAAAAGGAAGGATTAACATGGTCCGTACACCGACCCGGGGTCATTTTCGGGTTTTCACCTTATAGTACGATGAACATTTTGTTAACTCTTTGTGTTTACGCAACAATTTGTAAATTCGAAGGTCAACCGTTGACTTTTCCGGGAACCAAAGAAGCATGGGAAAGCTTCACCGATGCTTCGGATGCGGATCTGATCGCGGAGCATCAGATATGGGCCGCGGTGGATCCGATTGCGAAAAACGAAGCGTTTAATATTAGTAATGGAGATGTGTTTAAATGGAAGCATTTTTGGGGGGTGTTGGCTGAGCAATTTGAGGTTGAAAATGGAGGGTTAAAGGAAGATGAAGGAGGGAGGGTGAGTTTGGTGGAGATGATGAAAGATAAAGGGGGTGTTTGGGATGAGATTGTGAAGGATAAGGGTCTTTTGGGAACAAAATTAGAGGAGGTTGGAGGATGGTGGTTTGTGGATATTGTTTTTGGTAATGGAGGTATGTTGGATGTTATGAATAAGAGCAAAGAGCATGGGTTTTTAGGGTTTAGAAATTCAAAATCAACTTTTGTTTCTTGGATTGATAAGATAAAATGTTCCAAGATTGTTCCTTAG 1176 45.92 MSWWRSGFVGVARKKFEDNNPSRKYQKFALIIGVTGIVGNSLAEILPLHDTPGGPWKVYGVARRPQPPWNADYPIDYIQCDITDPDQTQSKLSTLTDLTHLFYVTWANSATESENCDINGKMFTNVLNAVIPNAPNLQHVCLQTGRKHYIGSFEDLAKNPVHDPPFYEDLPRLDSPNFYYTLEDILFKEVGKKEGLTWSVHRPGVIFGFSPYSTMNILLTLCVYATICKFEGQPLTFPGTKEAWESFTDASDADLIAEHQIWAAVDPIAKNEAFNISNGDVFKWKHFWGVLAEQFEVENGGLKEDEGGRVSLVEMMKDKGGVWDEIVKDKGLLGTKLEEVGGWWFVDIVFGNGGMLDVMNKSKEHGFLGFRNSKSTFVSWIDKIKCSKIVP 391
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00167 391 Pfam PRISE-like Rossmann-fold domain 30 391 - -
Sain12g00167 391 PANTHER 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE 23 391 - -
Sain12g00167 391 CDD 5beta-POR-like-SDR-a 29 331 - -
Sain12g00167 391 FunFam Iridoid synthase 25 391 - -
Sain12g00167 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 297 IPR036291 -
Sain12g00167 391 Gene3D - 27 391 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00167 K22419 Delta4-3-oxosteroid 5beta-reductase [EC:1.3.1.3]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr11:167853540 Sain12g00167 Sain-Chr12:2984586 dispersed
Sain Sain-Chr12:2984586 Sain3g00782 Sain-Chr3:25504105 dispersed