AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00175 ATGGCTTCACCTGGAAACAATCAAAATCAACAACCATTTGATGTTCAGAGATTATTCAATCCTTCTCAACAATCACCACAACTCACTCTCCAAAACCCTAACAATCCGTATCCTCCACCGTCCTCCGCCGCTTCTTATCCTCCACCCACCGTAACCGCCGGCGGCGGCCCTTACTCTTACAATCCTCCTCAAACTAATAACCCTATCTTCTATAATAAATTTCATATCCCACCGCCCCCTTTCTCCCCTCAACCAGACAACACAAACCTTAACCCTAACCCTAACCTCCCACACCAGCGATCGCTTCCGTATCCTACATCTCATCTTCAACCCCCGAGCCCTAACAACACAAACCCTAACCCTAACCCTAACCCTAACCATGGAGCTCGACTCATGGCTCTGTTAAGCTCCCCACCGCCTTCCACTCCCGATATGCCATCCCAATCACCGCCAGACCCTACACAGAACCATAACCCTAACCCTATACCGGCTATGGTCCCTTCCTCGGCGTTGCATTCAGGTGCAGGTCCGTCGCGGATGCCGAGCAGTAAGCTTCCGAAGGGACGACATTTGATCGGTGATCGTGTTGTTTATGATATAGATATCAGGTTGCCTGGAGAGATTCAGCCCCAACTCGAGGTTACTCCGATTACGAAATATGGGTCGGATCCTGGTTTGGTGGTGGGGAGACAGATTGCTGTTAATAAGACTTATATATGCTATGGTTTGAAACCTGGGACTATTAGGGTGCTTAATATAAACACTGCGTTAAGGTCGCTGCTTAAAGGTCTTGCTCAGAGGGTTACAGATATGGCTTTCTTTGCAGAGGATGTCCACCTTTTAGCCAGTGCAAGCATGGATGGCCGAGTTTATGTGTGGAAGATTACAGAAGGTCCCGATGAGGATGATAAGCCACAAATCACCGGAAAGATAGTAATTGCCGTACAAATTGTAGGAGAAGGAGAACCTGTTCATCCTCGAGTTTGTTGGCATTGCCATAAACAAGAAGTTCTTGTAGTTGGAATTGGGAAGCATATTCTTAGACTTGATACTACTAAGGTTGGTAGAGGGGAAGCATACTCTGCAGAGGAACCACTCAAATGTTCCGTTGATAAGTTGATTGATGGAATTCAGTTCGTTGGTAAGCATGATGGTGAAGTGACAGATCTATCAATGTGCCAATGGATGACCACCCGTTTGGTTTCTGCTTCAGTAGATGGAACGATAAAGATCTGGGAAGATCGCAAATCGTCACCAATTGCAGTACTGAGGCCGCACAATGGTCTTCCTGTCAACTCCGTTACATTTTTGACTGCTCCTCATCGGCCAGATCACATCATACTTATCACTGGGGGTTCATTGAATCGCGAAGTGAAAATATGGGCCTCGGAAAGTGAAGAAGGATGGTTGCTTCCAAGTGATGCCGATTCATGGCACTGTATTCAGACGCTGGAATTGAAAAGCTCTGCTGAACCGAGAATCGAAGATGCGTTCTTTAATCAAGTGGTTGCATTATCTCAAGCCGGCCTTCTCTTACTAGCAAACGCCAAGAAAAACGCTATATATGCTGTACACTTGGAATACGGGCCCAATCCAGAAGCGACCCGTATGGATTACATTGCCGAGTTCACCGTCACTATGCCGATCTTGAGCTTTACTGGAACCAGCGATCTATTACCACACGGAGACCACATCGTTCAGGTTTACTGTGTCCAAACACAAGCCATTCAGCAATACGCTTTGGACTTATCCCAGTGCTTACCACCTCCGATTTATGATGTTTTCGAGAAATCAGGTTCGACTGAAGCCATTCAGCCCGTCGGTTCGGATTGGACCGAAGTTGGCATCTCAAAGGAACTTTTTACAGCGAGTGCTGAAACGAAACAGATTCCGTCTCCGATCGTGAACGATACTGATATCTCGTGTGCTGTATCGCCGACGGTTCCGAAAAGCCCTAAGTTCTCTGGAAAAGATTCAGATTTTAGAAGCGGGTTTGAGCCTGGTAATCAACGAAATGGTTACGGTGATCAGAAATTTACGGAATTGGAAACTGCTCATTCGAATTTGTCTAGTGTGGTTTCGGTGGATGATGATATAAAAACCAATGAAAACAAAATTGCAAAAGAGGATGGTTCCACTGTTAGGTTTAAACATCCAACTCATCTGGTAACTCCTGCCGAATTGATGGCCACGTCATCGTCCGAAGTAAATCATGGTACTGATGACATGGCAGTAAACTCCGATGAGGTGGAGGTTAAGGTTGTTGGTGAAATAGGAATTAGTCAAAATGACGATGCTGCCCCTCAAGTTGAGTTGCATGGTTCGGGTTATGAAGCGAAGGAAAAAGGTTTTTCGTCACAAGCAACAGGTCTTGGGCTTGATATGGCACGTGATAACCGGGCCGTACCTGCTGAAAGTTATATGGTTAACGAGTCGAAAGAAGTTGATGGGATTGTTGAAAGCAAGGTGGTGGATCATAGTTCCGGTGCTCGGGATGAGGGTCAAGACACGGAAACTGATGTACCGGGGACGGTTCAGTTGGCGGCTCCCACATTGAGAGCCAAAAAACAGAAGGGAAAGAATGGTCAAACGTCAAGTGTCTTCAAGTCAACGGATTCTTGTGATGAACTAGGAGCGGGTTCAAGTATTCCCTCGGCGGAAACAATACTTTCGCAAATTCAGTCCATGCAAGAAGCAATTAATCAGGTTTTGATCAGTCAAAAGGAAATTCAAAAGCAGATTCCGGTGGTGGCTGCGGTACCAATTACAAAAGAAGGGAAAAGAATCGAGGCGGTCATTGGGAAGAGCATGGAGAAAATTTATAAAGCTAATTCCGATGCTTATTGGGCTCGTGCTCAAGAAGAGTTTGCAAAACAGGAAAAGTCCAACCGAGACCGCCATCAGCAAATCTCGACTTCAGCCTCGAATGGCCACAAAGACTTGCTTGCAGCATCGGAAAAATTGCTGAAGAAAGAAATGGCTGCAGCTGTGTCGGCTATTGGGCGCCCGCTTACTCAGGTTATCGAGAAGGCGGTTTCCACAGCTGTCTTAGAGTCTTTCCAGAGAGGCATAGGTGATAAGGCTGTAAATCAACTGGAGAAAGCGGTGAATTCTAAACTCGAAGCTACTGTTTCTAGACAAATTCAAGCTCAATTTCAAACTTCGGGGAGACAAGCTCTACAGGAAGCACTGAAGTCGAGTATGGAGGCTTCTGTTATTCCCACCTTTGAGACGTCGTGTAAGACCATGTTTGATCAAGTTGACGCTACATTTCAAAAGGGAATGGTTGAACATACGGGTGCAGCTCAGCAGCAAGCCGAATCCGTGCATTTGCCTTTGGCGTTTGCTTTGAGGGATACCATGAACTCAGCATCGTCTATGACTCAAACATTGAGCAGTGAATTGAGTGATGGTCAAAGGAAATTGATGGCTCTTGCAGTTGCCGGAGCAAGTTCTAAAGCGGTAAATCCATTGATAAGCCAAATATGCAACGGGCCTTCGGGTGGTTTCCATGAAAAGATTGAAGCACCTGTGGATCCAACAAAAGAGCTATCTAGATTGGTATATGAGCACAAATACGAGGAGGCTTTTACGGCCGCCCTGCAAAGAAGTGATGTTCGAATCGTTTCTTGGTTATGCTCTCAGGTTGATCTCCAGGGGATATTAACAAGAAATCCTGTTCCTCTGAGTCAAGGTGTACTACTATCTTTATTGCAGCAGTTGGCATGTGATATCGGGACCGATACGTCGAGAAAACTCGGTTGGATGATGGATGTGGTGGTGGCCATAAAACCGACGGATGGGATCATCGCGATGCACGTAAGGCCGATATTTGAACAAGTGCAGTCGATACTAAACCATCAGGTAAGTCTTCCCACTGCTTCGGTTGCAGAGCTCTCGAGCATGCGGGTCGTGATGAAACTCGTTAACTCGACGCTCAGGAGCCTGTAA 3951 46.32 MASPGNNQNQQPFDVQRLFNPSQQSPQLTLQNPNNPYPPPSSAASYPPPTVTAGGGPYSYNPPQTNNPIFYNKFHIPPPPFSPQPDNTNLNPNPNLPHQRSLPYPTSHLQPPSPNNTNPNPNPNPNHGARLMALLSSPPPSTPDMPSQSPPDPTQNHNPNPIPAMVPSSALHSGAGPSRMPSSKLPKGRHLIGDRVVYDIDIRLPGEIQPQLEVTPITKYGSDPGLVVGRQIAVNKTYICYGLKPGTIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASMDGRVYVWKITEGPDEDDKPQITGKIVIAVQIVGEGEPVHPRVCWHCHKQEVLVVGIGKHILRLDTTKVGRGEAYSAEEPLKCSVDKLIDGIQFVGKHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKSSPIAVLRPHNGLPVNSVTFLTAPHRPDHIILITGGSLNREVKIWASESEEGWLLPSDADSWHCIQTLELKSSAEPRIEDAFFNQVVALSQAGLLLLANAKKNAIYAVHLEYGPNPEATRMDYIAEFTVTMPILSFTGTSDLLPHGDHIVQVYCVQTQAIQQYALDLSQCLPPPIYDVFEKSGSTEAIQPVGSDWTEVGISKELFTASAETKQIPSPIVNDTDISCAVSPTVPKSPKFSGKDSDFRSGFEPGNQRNGYGDQKFTELETAHSNLSSVVSVDDDIKTNENKIAKEDGSTVRFKHPTHLVTPAELMATSSSEVNHGTDDMAVNSDEVEVKVVGEIGISQNDDAAPQVELHGSGYEAKEKGFSSQATGLGLDMARDNRAVPAESYMVNESKEVDGIVESKVVDHSSGARDEGQDTETDVPGTVQLAAPTLRAKKQKGKNGQTSSVFKSTDSCDELGAGSSIPSAETILSQIQSMQEAINQVLISQKEIQKQIPVVAAVPITKEGKRIEAVIGKSMEKIYKANSDAYWARAQEEFAKQEKSNRDRHQQISTSASNGHKDLLAASEKLLKKEMAAAVSAIGRPLTQVIEKAVSTAVLESFQRGIGDKAVNQLEKAVNSKLEATVSRQIQAQFQTSGRQALQEALKSSMEASVIPTFETSCKTMFDQVDATFQKGMVEHTGAAQQQAESVHLPLAFALRDTMNSASSMTQTLSSELSDGQRKLMALAVAGASSKAVNPLISQICNGPSGGFHEKIEAPVDPTKELSRLVYEHKYEEAFTAALQRSDVRIVSWLCSQVDLQGILTRNPVPLSQGVLLSLLQQLACDIGTDTSRKLGWMMDVVVAIKPTDGIIAMHVRPIFEQVQSILNHQVSLPTASVAELSSMRVVMKLVNSTLRSL 1316
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00175 1316 FunFam Enhancer of mRNA-decapping protein 4 1229 1315 - -
Sain12g00175 1316 MobiDBLite consensus disorder prediction 647 676 - -
Sain12g00175 1316 MobiDBLite consensus disorder prediction 1 31 - -
Sain12g00175 1316 MobiDBLite consensus disorder prediction 825 845 - -
Sain12g00175 1316 Gene3D - 214 499 IPR015943 GO:0005515(InterPro)
Sain12g00175 1316 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1186 1291 IPR049404 -
Sain12g00175 1316 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 303 IPR001680 GO:0005515(InterPro)
Sain12g00175 1316 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 21 1315 IPR045152 GO:0000932(PANTHER)|GO:0031087(PANTHER)|GO:0031087(InterPro)
Sain12g00175 1316 SMART WD40-4 374 413 IPR001680 GO:0005515(InterPro)
Sain12g00175 1316 SMART WD40-4 254 294 IPR001680 GO:0005515(InterPro)
Sain12g00175 1316 SMART WD40-4 416 462 IPR001680 GO:0005515(InterPro)
Sain12g00175 1316 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 422 IPR001680 GO:0005515(InterPro)
Sain12g00175 1316 MobiDBLite consensus disorder prediction 88 106 - -
Sain12g00175 1316 MobiDBLite consensus disorder prediction 958 977 - -
Sain12g00175 1316 FunFam enhancer of mRNA-decapping protein 4 213 527 - -
Sain12g00175 1316 MobiDBLite consensus disorder prediction 73 87 - -
Sain12g00175 1316 MobiDBLite consensus disorder prediction 57 71 - -
Sain12g00175 1316 MobiDBLite consensus disorder prediction 107 121 - -
Sain12g00175 1316 SUPERFAMILY WD40 repeat-like 234 489 IPR036322 GO:0005515(InterPro)
Sain12g00175 1316 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 214 526 IPR032401 -
Sain12g00175 1316 MobiDBLite consensus disorder prediction 1 188 - -
Sain12g00175 1316 Gene3D - 1229 1315 IPR044938 -
Sain12g00175 1316 MobiDBLite consensus disorder prediction 32 46 - -
Sain12g00175 1316 MobiDBLite consensus disorder prediction 139 160 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00175 K12616 enhancer of mRNA-decapping protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
138660 Sain12g00175 Sain13g02668
138661 Sain12g00175 Sain9g00039
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:3110401 Sain13g02668 Sain-Chr13:138788504 wgd
Sain Sain-Chr12:3110401 Sain9g00039 Sain-Chr9:1295685 wgd