AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00188 ATGGCGATTTTCGCGGGAAAATTCGTTAATGGCGCTGCATTCGAGCTTCAGTCCCGACTGCTCTTGAAGCCCTGGGTGAAGAAGATTGTGGTTCGATGCTGTTCGAATTCCGGGGAAAGATCTAAGGATTTTCCAGTAAGGTACACTCCTAAGAGATCTTCGAAATTCAATAAACTTGATGATTCTAATTCGTCTCCGAAGGACTCTGAGAATCACGAAGTGCGTCGATTCACAAACCCTGATTCGTCGAGTGATGAAATTTCAAATGGTGGGGAGAGGTCGAGGATAGGATTATTTTCGGACAAAAAATCACCAGATGACGGTTTTAAGTCAGGCAAGTTAATATCAAAAGAAAAGATAATTGGTAATTCAGCTGTGAGATCAGAGGTGAGAGAACATGATTATAAACGGGGATTTGCGGAGTCAGATTCTATTGAAGAACTTGATGAGTTTGATGCCATGGATGGTCCCGAGGAGGTTTTGGATGAACTCGAGACTCATAATGAAAATTACGAAATCAAAAGTCTCACACCTGAACCTAGTAAAACTAAAGAAGCAGCTGAGAAGACGACAGTTGGATTGCTTGCTGCAAGAGCATACACAGCACTCGAGCTGAAGAAGAAACTACTAGGAAAGAAGTTCTCCCATGAAGTTGTCAATGCTGTGATTTCTGACTTCCAGAACAGAGGGTTTATCAATGATTTATCATATGCTGAGTCATTTTCTCGATCGAGATGGTCTTCATCAAGTTGGGGTCCATGTAGAATCAAACAAGCCTTGACCAAAAAGGGTGTTAATGATCTTGATGCACAAAAAGCAATAAAATTGGTTTTCGACGATGGTGAACCTAGCGATGATCAAGGTTCTAGACTTGGATTATCAAAGCCCTCGTTGGATCATCTATTTGCTCAAGCTTCAAAGCAGTGGCTTCGTGCTAAAGATCTCCCCATTGAAAAACAAAAGTCAAGGATCATCACATGGCTCCAATACCGTGGCTTTAATTGGGGCGTTATCAACTTCATCTTGAAAAGGTTACAATCTGGGCATCCTCCATAG 1056 41.86 MAIFAGKFVNGAAFELQSRLLLKPWVKKIVVRCCSNSGERSKDFPVRYTPKRSSKFNKLDDSNSSPKDSENHEVRRFTNPDSSSDEISNGGERSRIGLFSDKKSPDDGFKSGKLISKEKIIGNSAVRSEVREHDYKRGFAESDSIEELDEFDAMDGPEEVLDELETHNENYEIKSLTPEPSKTKEAAEKTTVGLLAARAYTALELKKKLLGKKFSHEVVNAVISDFQNRGFINDLSYAESFSRSRWSSSSWGPCRIKQALTKKGVNDLDAQKAIKLVFDDGEPSDDQGSRLGLSKPSLDHLFAQASKQWLRAKDLPIEKQKSRIITWLQYRGFNWGVINFILKRLQSGHPP 351
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00188 351 PANTHER REGULATORY PROTEIN RECX FAMILY PROTEIN 13 350 IPR003783 GO:0006282(InterPro)
Sain12g00188 351 Gene3D - 296 349 IPR036388 -
Sain12g00188 351 Gene3D - 188 231 IPR036388 -
Sain12g00188 351 Pfam RecX, second three-helix domain 233 273 IPR053924 -
Sain12g00188 351 Hamap Regulatory protein RecX [recX]. 156 349 IPR003783 GO:0006282(InterPro)
Sain12g00188 351 Pfam RecX, third three-helix domain 299 342 IPR053925 -
Sain12g00188 351 MobiDBLite consensus disorder prediction 40 104 - -
Sain12g00188 351 Gene3D - 233 276 IPR036388 -
Sain12g00188 351 MobiDBLite consensus disorder prediction 44 80 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00188 K03565 regulatory protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:3324148 Sain2g00624 Sain-Chr2:30464713 transposed