AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00190 ATGGCGGAAATAGAGACGTTTGCTTTCCAAGCAGAGATTAACCAGCTGCTGAGTCTAATTATCAACACTTTCTACAGCAACAAGGAGATATTCCTTCGTGAGCTTGTTAGCAACGCTTCCGATGCTCTGGATAAGATTCGTTTTGAGAGTTTGACTGATAAGAGCAAGCTAGATGGTCAACCGGAGCTGTTCATCCACATTATTCCCGACAAGGCCAACAATACACTGACCATCATTGACAGTGGTATTGGAATGACAAAAGCAGATTTGGTGAATAATCTGGGTACCATTGCTCGATCTGGTACCAAGGAATTCATGGAAGCCATTGCTGCTGGTGCTGATGTTAGCATGATTGGACAATTTGGTGTCGGTTTCTACTCAGCTTATCTTGTTGCAGAAAAAGTCATTGTCACCACAAAACACAACGATGATGAACAGTATGTTTGGGAGTCACAGGCTGGTGGTTCATTCACAGTAACCCGCGATGAAAGTGAACCCCTTGGCAGGGGCACAAAAATTGTCCTTTATCTCAAGGAGGATCAGCTCGAGTACCTTGAGGAACGCAGGCTCAAGGATTTAATCAAGAAGCACTCTGAATTCATCAGCTACCCAATCTCCCTTTGGGTCGAGAAGACAACCGAGAAGGAAATATCTGACGATGAAGATGAAGAAGAGAAGAAAGATGAAGAAGAAGAGAAGAAAGACGAGGAAGGCAAAGTCGAAGAGGTTGATGAAGAGAAGAAGGAAGAGAAGAAAAAGAAGAAAATCAAAGAAGTGTCACATGAATGGTCTTTGATGAACAAGCAAAAACCCATCTGGATGAGGAAGCCAGAGGAGATCACCAAAGAAGAGTATGCAGCTTTCTACAAAAGCCTCACCAACGACTGGGAAGAACACTTGAACGTGAAGCACTTTTCGGTTGAAGGACAGCTGGAATTCAAGGCTGTTCTTTTCGTACCTAAGCGAGCCCCCTTTGACCTGTTTGACTCAAAGAAGAAGCCCAACAACATCAAGCTTTACGTTCGTCGTGTCTTTATCATGGACAACTGCGAGGAGATCATACCCGAATACCTCAGTTTCGTCAAGGGTATTGTGGATTCTGAGGATCTTCCTCTAAACATCTCAAGAGAAATGTTGCAGCAGAACAAGATCCTTAAAGTTATTCGCAAGAACTTGGTGAAAAAGTGCATTGAGCTTTTCCAGGAGATCGCGGAGAACAAGGAGGATTACGTCAAGTTCTACGAAGCCTTCTCCAAGAATCTCAAACTGGGTATCCACGAAGATTCCACAAACAAGACGAAACTCGCTGAGTTGCTCCGATACCACTCCACCAAGAGTGGAGATGAGATGACTAGCTTGAAGGACTACGTTACACGAATGAAGGATGGTCAAAACGAAATCTTTTACATCACTGGTGAGAGCAAAAAAGCCGTAGAGAATTCCCCATTCCTCGAGAAGTTAAAGAAGAAGGGATACGAAGTCCTCTATATGGTTGACGCCATTGATGAGTACTCCGTTGGCCAGTTGAAAGAATTCGAAGGAAAGAAGCTGGTTTCCGCCACTAAGGAAGGTCTAAAGCTTGAAGAAACCGAAGATGAGAAGTTGAAACAAGAATCTTTGAAAGAGAAATTCGAAGGTCTATGCAAGGTGATCAAGGATGTGTTGGGTGACAAGGTCGAGAAAGTGGTCGTGTCTGACCGAGTTGTTGACTCTCCGTGCTGTTTGGTAACGGGGGAATACGGGTGGACGGCCAACATGGAGCGAATCATGAAAGCTCAGGCGTTGAGGGATGCAAGCATGGCTGGATACATGTCTAGCAAAAAGACAATGGAAATCAACCCGGAGAACGCGATCATGGAGGAGCTGAGGAAAAGAGCGGACGCGGATAAAAACGACAAATCCGTTAAGGATTTGGTTCTGTTGCTGTTCGAGACTTCGTTGTTGACATCTGGGTTTAGCCTTGATGAACCAAACACATTTGGGAACAGGATTCATAGGATGTTGAAGCTTGGATTGAGCATTGATGATGATGATGCAGGTGAGGGTGATGCTGATATTCCTGCTCTTGAAGAAGCAGAGATTGATGCTGAAGGCAGCAAGATGGAGGAAGTCGACTAA 2118 44.62 MAEIETFAFQAEINQLLSLIINTFYSNKEIFLRELVSNASDALDKIRFESLTDKSKLDGQPELFIHIIPDKANNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDESEPLGRGTKIVLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTTEKEISDDEDEEEKKDEEEEKKDEEGKVEEVDEEKKEEKKKKKIKEVSHEWSLMNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLNVKHFSVEGQLEFKAVLFVPKRAPFDLFDSKKKPNNIKLYVRRVFIMDNCEEIIPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCIELFQEIAENKEDYVKFYEAFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDEMTSLKDYVTRMKDGQNEIFYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSVGQLKEFEGKKLVSATKEGLKLEETEDEKLKQESLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDASMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFETSLLTSGFSLDEPNTFGNRIHRMLKLGLSIDDDDAGEGDADIPALEEAEIDAEGSKMEEVD 705
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00190 705 Pfam Hsp90 protein 183 693 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Sain12g00190 705 SMART HKATPase-4 27 181 IPR003594 -
Sain12g00190 705 MobiDBLite consensus disorder prediction 214 251 - -
Sain12g00190 705 PIRSF HSP90-HTPG 1 705 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Sain12g00190 705 MobiDBLite consensus disorder prediction 216 239 - -
Sain12g00190 705 MobiDBLite consensus disorder prediction 678 705 - -
Sain12g00190 705 Coils Coil 527 547 - -
Sain12g00190 705 FunFam Heat shock protein 90 alpha 267 435 - -
Sain12g00190 705 FunFam Heat shock protein 90 alpha 436 522 - -
Sain12g00190 705 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 180 IPR003594 -
Sain12g00190 705 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 4 678 IPR001404 GO:0005524(InterPro)|GO:0005829(PANTHER)|GO:0005886(PANTHER)|GO:0006457(PANTHER)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0032991(PANTHER)|GO:0034605(PANTHER)|GO:0048471(PANTHER)|GO:0050821(PANTHER)|GO:0051082(InterPro)|GO:0051082(PANTHER)|GO:0140662(InterPro)
Sain12g00190 705 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sain12g00190 705 Gene3D - 267 435 - -
Sain12g00190 705 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 4 212 IPR036890 -
Sain12g00190 705 Hamap Chaperone protein HtpG [htpG]. 2 669 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Sain12g00190 705 CDD HATPase-Hsp90-like 14 201 IPR020575 -
Sain12g00190 705 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Sain12g00190 705 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Sain12g00190 705 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Sain12g00190 705 PRINTS 90kDa heat shock protein signature 169 186 IPR020575 -
Sain12g00190 705 PRINTS 90kDa heat shock protein signature 187 205 IPR020575 -
Sain12g00190 705 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Sain12g00190 705 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Sain12g00190 705 Gene3D - 436 522 - -
Sain12g00190 705 FunFam Heat shock cognate protein 2 227 - -
Sain12g00190 705 SUPERFAMILY Ribosomal protein S5 domain 2-like 268 523 IPR020568 -
Sain12g00190 705 Coils Coil 219 253 - -
Sain12g00190 705 SUPERFAMILY HSP90 C-terminal domain 547 668 IPR037196 -
Sain12g00190 705 Gene3D - 523 672 IPR037196 -
Sain12g00190 705 Gene3D - 1 225 IPR036890 -
Sain12g00190 705 FunFam Heat shock protein 90 alpha 523 673 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00190 K04079 molecular chaperone HtpG
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:3391160 Sain9g00050 Sain-Chr9:1483104 dispersed
Sain Sain-Chr12:3374902 Sain12g00190 Sain-Chr12:3391160 tandem