AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00210 ATGGCAATGCTTCGATTGCCTTCCATTCAAATATGTTGTTTAACAGATAAGAAGCATAAAGATTCTTGGAGCAAATCATTGAAGTTTGGAGAATCAAATTCAAGAACAGCAACTTACAGAAAAGGTTCTTTTCATCAAGAACGCAAACCCCAGAAGGTGAATCTGGAAATTTCGCCTCATAGAGCTGTGTCTGCTGTGAGGTTAATGCGGATAGAGTTTGGTGGTGCTTTTGCTGACCTTTTAAACGAGAAAGGGAAGGGGTCGGGTGATAACGAGATGGGATATGTTGAAAGAACTCTTGGGTTTTGCACCCGCGATTTGGAAGATAGAGATCTTAGATTGGTAACGGATATCGTTGGAGGTACAATTCGTTGGAGAAAATATCTTGACTATTTGATTTTGTCCTTGTGCCATGATCCAAACGTGTTTAATCGTATGGAGCCTCTACTATTACAGATTCTTCGGATTGGATTCTATGAGATCGTAAAGCTAGACTCCCCTTCATATGCTGTCGTAGATGAGAATGTGAAGCTTGCAAAAATTGCCCTTAGGCCGGGTGCTGGTAACATGGTCAATGGAATTCTGAGGAAGCTCGTTTTGCTTAAGGAAAGTGATTCTCTTCCTTCACCTCAATTAGAGGGCGATGATCGTGCACAAGCACGAGCTCTTGCTACTCTTTATTCTCACCCAGTTTGGATGGTGAGGCGTTGGACAAAATACCTTGGACGTGAAGATGCTATTAAGCTGATGGTGTGGAATAACAACTATCCAAGTTTTAGTCTGAGGGCTAACAGAGGCAAAGGTTTTACACGATCAGAGCTTGTGTCACGACTTGAAACATTGAAGGTACCCTATGAGCTCTCTCCTCACCTGGATGATTTTGTTCGTATCAGCACAGGAATGCAGAGTGTTATACAAGATGGATTACTAAAAGAAGGCTTATGTTCTGTCCAAGATGAGAGTGCAGGTTTGGTAATTTCCATTGTTGACCCACAACCTGGAGAGACCATAATAGACTGTTGTGCTGCTCCTGGAGGGAAGACCCTCTTCATGGCAGCTTGTTTGAATGGCAAAGGCATGGTAACGGCAATCGACATAAATAAAGGACGTTTGAGGATCCTCAAAGAGACGTCCAAACTGCAGCAACTTGATGATGTCATCACCACGGTTCATGCAGATCTTCGTGCATTTCCTGAGAATAACCATGAGGCATATGAAAAAGTGTTGTTGGATGCTCCTTGTTCTGGACTTGGTGTTCTTTCCAAGAGAGCAGATTTACGCTGGAATAGGAAGTCGGAAGATATGGAAGAACTTAAAAGTTTGCAAGACGAACTTCTTGATGCAGCTTCCATGTTGGTTAAACCCGGTGGAGTGCTAGTATATAGCACGTGTTCAATTGATCATGAAGAGAATGAAGAGAGGGTGGCTGCGTTTCTTCTCAGGCATCCGGTACTAAAACCTTCGTGA 1467 43.01 MAMLRLPSIQICCLTDKKHKDSWSKSLKFGESNSRTATYRKGSFHQERKPQKVNLEISPHRAVSAVRLMRIEFGGAFADLLNEKGKGSGDNEMGYVERTLGFCTRDLEDRDLRLVTDIVGGTIRWRKYLDYLILSLCHDPNVFNRMEPLLLQILRIGFYEIVKLDSPSYAVVDENVKLAKIALRPGAGNMVNGILRKLVLLKESDSLPSPQLEGDDRAQARALATLYSHPVWMVRRWTKYLGREDAIKLMVWNNNYPSFSLRANRGKGFTRSELVSRLETLKVPYELSPHLDDFVRISTGMQSVIQDGLLKEGLCSVQDESAGLVISIVDPQPGETIIDCCAAPGGKTLFMAACLNGKGMVTAIDINKGRLRILKETSKLQQLDDVITTVHADLRAFPENNHEAYEKVLLDAPCSGLGVLSKRADLRWNRKSEDMEELKSLQDELLDAASMLVKPGGVLVYSTCSIDHEENEERVAAFLLRHPVLKPS 488
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00210 488 Gene3D - 62 220 IPR035926 -
Sain12g00210 488 PRINTS RNA (C5-cytosine) methyltransferase signature 406 418 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Sain12g00210 488 PRINTS RNA (C5-cytosine) methyltransferase signature 309 323 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Sain12g00210 488 PRINTS RNA (C5-cytosine) methyltransferase signature 338 348 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Sain12g00210 488 PRINTS RNA (C5-cytosine) methyltransferase signature 456 472 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Sain12g00210 488 PANTHER NOP2 YEAST -RELATED NOL1-NOP2-FMU SUN DOMAIN-CONTAINING 108 484 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Sain12g00210 488 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 221 483 IPR029063 -
Sain12g00210 488 PRINTS Viridiplantae FMU-related RCMT signature 66 89 IPR023268 -
Sain12g00210 488 PRINTS Viridiplantae FMU-related RCMT signature 90 106 IPR023268 -
Sain12g00210 488 PRINTS Viridiplantae FMU-related RCMT signature 206 219 IPR023268 -
Sain12g00210 488 ProSiteProfiles SAM-dependent MTase RsmB-NOP-type domain profile. 249 488 IPR001678 GO:0008168(InterPro)
Sain12g00210 488 Gene3D Vaccinia Virus protein VP39 325 487 IPR029063 -
Sain12g00210 488 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 216 320 - -
Sain12g00210 488 Pfam Methyltr-RsmF-B-like, ferredoxin-like domain 229 300 IPR054728 -
Sain12g00210 488 FunFam Ribosomal RNA small subunit methyltransferase B 58 208 - -
Sain12g00210 488 Pfam NusB family 96 198 IPR006027 GO:0003723(InterPro)|GO:0006355(InterPro)
Sain12g00210 488 CDD AdoMet-MTases 336 462 - -
Sain12g00210 488 Pfam 16S rRNA methyltransferase RsmB-F 328 484 IPR049560 -
Sain12g00210 488 Gene3D Sun protein; domain 3 221 322 - -
Sain12g00210 488 FunFam Ribosomal RNA small subunit methyltransferase B 321 488 - -
Sain12g00210 488 SUPERFAMILY NusB-like 96 233 IPR035926 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00210 K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:3765070 Sain8g02264 Sain-Chr8:146533485 dispersed
Sain Sain-Chr12:3765070 Sain14g01934 Sain-Chr14:64539114 transposed