AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00212 ATGGAAAGAGATGGTGTTTGGATTCCCCTGACCCCGGGAAAGCCAATTCCCACTAGGTTAGGGTTAGGGTTGCATTCGGTTCAACCGATGGGAGGTCGACATAACTGCAAGGCGGCATTGATTTCTGGACGAGGGAATGGAATCGAGAATCTAAACGAGGGATTTCCGTTTATAGGTTCTTTAAATGCTACTGGATATATGGATAGGAATGGAATTAATGAGATGTATGAATTTAAGGCTGGCGCGGCTTCAGGTGTGGCTGGAAAGGATCCTAAAAGCAATGCAGCGGATCAGCATGACACAAGCTGTGCACAAGAGGAGGCAGTCAAAGTACCTCATCCCGAGTTCAACAATAAAAACGCACACTGTGTTCATGAGTCAAAGGCTGGTCTTGGGTCAACTCCTTCCCCATCCGAGACAAAAAATAGCAGGAAAAGGCGTAATGATGGCATTGACCTGAACAAGAAGCCAAGTCAAAGACCCCGAATGAAAAAACACAGGCCTAAAATATTAGACGATAGCAAACCAAAGAAAGTCCCAAAGGCCCAAACTCCACGGGCTTCGACCCCACGACCAAAAACTCCAAAACCCGTAACTCCAAATCGGGTACAAGAGAAGAGGAAGCCCGCAAGAAAGAACACATTCACAAGCTCAACTAGTTATGGCTATAAAGACGTTGTGCAAGATCCCCAATCAGCTCCCACTTCATCCATAATTGTCGTTAAGTCATGCAAGCGTTTGTTGGATTTTAACCGTCATCTTGTTGAACGAGAGTCTCCTTATGTGTCGAAGTCAAACGAACAACCTCGGAGATTTAATTACGACCTTGGAGAATATAATTATTTTGGTAAGATTGTTACTTCCAAGAGAAATACACCGAGGAGGAGCAGGTTTCAAAAGAAGTGTCTTAAAGCTTCAGAGGATTTGTCGGGAGATAATAACGACCAGCAATGCCGTCAAGAAATTTCGGTCGTAAGAAATCAAGAACTAGCTGAAAGACATGTTAGAAGGTTTGTTTACTTTTATCATCGCCGAAAGAAAAGTATACCTACGCTGAAAGTATATCAGAGGAAATTTAGAGCAAATCAGTGTCTACAAAATAGTAAAAAAAGTGGGCCCAATTTTCCAAGTATATTCAAGAAACGAAGGGCAAAGAGAAGAAAGGCCACTATGATTGGAACTTGGTGGTACGCCAAGGCTTTTGAAGATGGCAAGAATCACGTGAAAAGATCGCATAGAAAGCACGTAAAAACCATCGGAAAAAGTGCACGTAATAGGGTCGATAAATCCAAAGACCACAAAGAAGCGGTGAAACCCGAAGAAAGGTTTCTTCGTGTGTTTTTAACCCAGAAAAGGAAGCGATCGATACGAAACACTCGTAGGAGAGAAAATATTATGGACTTCCCTATTTTTAAAGCAATTTCTTATCAAAGTGAAAAAAGGAGAGAAAATATCATGGACTTGTCTATTTTTAAAGCAATGCCTTATGAAAGTGAAAAATGCCTTTCACTGCAAGAGGTTCCGATTCACACAATCGAGAGTTTTACCGCACCACACCGGAATTTCCAACTAGTTGATAACTATGTGGAGCCTCTGAAGTCGCTCCAACTACAAGAGGTTCCGGTGCTTGAAAGTGAAAGTTTGCTACCAGGAAACCAAGCTACCCCGCTTTCTAAAGAAGAGTTAAATAACTTGTATGCAAGAGAAATGGGTGAGCTTGTAAGAAGGAAGCTGGAGAATCTAGACATCAATGCTGAATGCAAACAACTTGTGGTACGGAATAGTAATTTCAGTGGGACCCTTGTAGAGACGGATCCTCCCAAGAAGCGTAAAATGATTCCGAAGGTGGACCTTGATGAGGAGACATTGAGAGTGTGGAAGCTGCTGATGGAGAACGATGGAAGTGAACCGGTTGAAGAAACGGATAAAGAGAAGGAGGAATGGTGGGAAAGACAGAGGAAAGTATTTCGTGGACGAGTCGACTCGTTCATTGCCAAGATGCATCTTATCCAAGGTAACAGGCGTTTCTCACAATGGAAGGGCTCAGTTGTGGACTCGGTGGTTGGAGTTTATTTAACTCAAAACGTGTCGGACCATCTTTCAAGCTCGGCTTTCATGTCTCTAGCGGCAAGATTTCCGGTTAAGTCCAGTAGCAAAGAAGTTTGTCATCAATGTGAAGTCGAAACTAGCCAAGAATTAGTCGCAAGTAATAACGAAACAGAGAACGATATGATAACTTTATGTGATGATGTAAGCGATGCGACTCCAACCGCGAAACCTGAACAAGTGGGGGTTTCAAATCCATTTCTGGTTCAAGATAAGCCGTGTGTCGATGAAAATTCAAATGCTTTCCGGAAACTTCTCGACATAGAGGAAGTGGACCATCTAACGCGATTTTATGGTTCCAGGAATAATAAATCGCCACTTAATGAGAAAAGAGATGATGGGGATTTGAATGTCAGCATAGAAGGCGAAGAACAAAGTGCAATATCTTTTGATTTGTCAATTTCTCGTGAACCTTGTGCTACCATTTCTGATGTAAACGCGAGTTTATGTGAGATTTCAGTTTTCGGGAACGTAGAGCGGGAGGTGGTAGGGGAAAAGAATGAACGTAATAAGCGTCTTAACCATTCAGAAAGTGAATTTAAGGGAAAAGAGGGGGTTTCAAATCAATTTCTGGTTCAAGATAAGCCGTGTGTCGATGGAAATTCAAATGCTAAACTTGTCGACATAGATGAGGTGGACTATCTTAAGCGCTTTTCTAGTTCCGGGAATGATGAATCACCACTAAACGAGAGCGGAGATAACGGGGATTGGAATGTGAGCAAAGAAGGCGAAGAGCAAAGTGTAACATCTTTCGATTTGCCAAGTTTTCATGAACCTTGTGCTATCGTTTCTGATGTAAATGTGGGTATATGTGAGACTTCAGTTTTCAGGAACGTAGAGAGGGAGGTGGTAGGGGAAAAGAATGGAGGTAACGAGCGTCTTAACCATTCAGAAAGTGAACTTACGGGAAAAGAGGGGGATTCAGATCCGATTTTAGCTCAAGATAAGCCGTGTGTCGATGGAACTTCAAATGCTTTCCGTAAACTTCTCGACATAGAGGAGGTGGACTATCTCAAGCAATTTTATAAATCCGGAAATGAAGAATCGCCACTAAACGAGAGCAGAGATAATGGGATTCTGAATGCAAGCAAAGACGGCGAAGATCAAAGTGCAGCGTCTTTTTATTTGCCTCGTTCTCATGAACCTTGTGCTACCACCTCGGGTGTAAACGCGGGTTTATGTGAGATTTCGATTTTCAGGAACGTAGAGGGGGATGTGGTAGGGGAAAAGAATGAACGTAATGAGCGTCTTAACCATTCAGATGGTGGATTCATAGTTCAACAAAAGGAAGAAGAACCAATAATTGTTGCTCCAGTTTGCACGCTGAATTCTGAAGTCACAATTGAACAAAGCATAGATGCAGTAAACAATCACTCGACCATGAACACAATCCCGTTAGACCCTCGAAGCACGGGAAAAAAGAAAAGCAGAAGTGACGAAAAGCAAAAAACGAAGACCGACTGGGAAAGTTTGAGGAGAATGTATTGCAAAACGGGAGGAAAAGAAACGAATGAGAATAACACGGATGCGGTTGATTGGGATGCCGTTAGGCGTGCTACGGTTGAAGAAATTGCTGAAACTATAGTTGAAAGAGGAATGAATAATGTGTTAGCTGCACGGATAAAAGAGTTTTTAGAACGAATGGTTAAAGACCATGGAACTATTGATCTCGAGTGGTTAAGGGATGTTCCACCAGACAAGGCAAAGGAGTTCTTGCTGAGCATACAAGGAATTGGTTTGAAAAGTGTGGAGTGTGTACGGCTTTTAACACTACATCATCTTGCTTTTCCTGTTGACACAAATGTCGGTCGGGTAGCCACACGTCTAGGGTGGGTTCCACTGCAGCCCCTCCCTGAAGAAGTTCAAATTCATCTTTTAAACTCGTACCCAATGATGGACTCCATTCAGAAATACCTCTTCCCCAGGCTATGCACACTTGATCAAAGAACATTATACGAGTTACATTATCAGTTGATCACATTTGGAAAGGTATTTTGTACCAAGAAAAGTCCAAATTGCAATGCATGTCCCATGAGAGCAGAGTGCAGACATTATGCAAGCGCATTTGCTAGTGCTCGGCTTGCCCTTCCTGGACCAAAAGAAAGTAACGTAACTTCAATTGTCCCATCTGCAAATGAACAAAACCATTCGATGCTTAATACACCACCATCATCCTTCGACTTAGAACTCGACAACTTGGGTTCAAGGTATCATGCTCAAAATAGCGAACCCATAATCGAAGTTCCCCCATCTCTGGAGCCAAGTTATTATGATCGAAATAGCGAACCCATAATCGAAGTTCCCCAATCTCTGGAGCCAAGTTATCATGATCGAAATAGCGAACCCATAATCGAAGTTCCCCCATCTCCGGAGCCTGAGCCAATCATACGCGATATTGAAGATTACTATTGTGAGTCGGATGATGAAATTCCCACCATCCGACTTAACACCGAAGAGTTCCGGGAAGCTTTAAAGGATACTATATACGTTAATAGTCTTTCTCTCCCGGAAGCTGAAATGTCAAAAGCTCTAGTTGCGTTAACCGCACAAGCCGCCTCCATTCCTGTGCCGCGAATGAAGTATGTAGCCAAGTTGAGGACTGTACACTACGTCTATGAGCTCCCGGACTACCATCCGAGTTTGGCTGGGTTTGACGAAAGGGAACACGATGATCCAACCCCATATCTTCTTGCCATTTGGCTTCCAGGTGAAACCTCGAATTCATTAGAATACAACAATGATCAAGAAGAAACGGTTAAAGGAACGGTCTTGATACCTTGTCGAACAGCAAATAGAGGGAAATTTCCCCTCAACGGAACATATTTTCAGGTTAACGAGGTGTTTGCCGATGATGAAACTAGTCAGATTCCGATGGACGTTCCAAGATGTCAGCTGTGGAATTTGTCAAGACGATATCTAGGTTGTGGGACTTCCGCAACATCAATATTTAAAGCCCTTTCAATGAGTGATATTCAGCGCTGCTTTTGGAAAGGATCGATATGTGTGAGAGGATTCAACAGAAAAACAAGGCAGCCGCGTCCTCTTCATCGAAGATTTCATATTTCAACAACCGCAATTGCAGCAGAGAACAAAAGAACAGCAGGGAAGAGATAG 5220 42.89 MERDGVWIPLTPGKPIPTRLGLGLHSVQPMGGRHNCKAALISGRGNGIENLNEGFPFIGSLNATGYMDRNGINEMYEFKAGAASGVAGKDPKSNAADQHDTSCAQEEAVKVPHPEFNNKNAHCVHESKAGLGSTPSPSETKNSRKRRNDGIDLNKKPSQRPRMKKHRPKILDDSKPKKVPKAQTPRASTPRPKTPKPVTPNRVQEKRKPARKNTFTSSTSYGYKDVVQDPQSAPTSSIIVVKSCKRLLDFNRHLVERESPYVSKSNEQPRRFNYDLGEYNYFGKIVTSKRNTPRRSRFQKKCLKASEDLSGDNNDQQCRQEISVVRNQELAERHVRRFVYFYHRRKKSIPTLKVYQRKFRANQCLQNSKKSGPNFPSIFKKRRAKRRKATMIGTWWYAKAFEDGKNHVKRSHRKHVKTIGKSARNRVDKSKDHKEAVKPEERFLRVFLTQKRKRSIRNTRRRENIMDFPIFKAISYQSEKRRENIMDLSIFKAMPYESEKCLSLQEVPIHTIESFTAPHRNFQLVDNYVEPLKSLQLQEVPVLESESLLPGNQATPLSKEELNNLYAREMGELVRRKLENLDINAECKQLVVRNSNFSGTLVETDPPKKRKMIPKVDLDEETLRVWKLLMENDGSEPVEETDKEKEEWWERQRKVFRGRVDSFIAKMHLIQGNRRFSQWKGSVVDSVVGVYLTQNVSDHLSSSAFMSLAARFPVKSSSKEVCHQCEVETSQELVASNNETENDMITLCDDVSDATPTAKPEQVGVSNPFLVQDKPCVDENSNAFRKLLDIEEVDHLTRFYGSRNNKSPLNEKRDDGDLNVSIEGEEQSAISFDLSISREPCATISDVNASLCEISVFGNVEREVVGEKNERNKRLNHSESEFKGKEGVSNQFLVQDKPCVDGNSNAKLVDIDEVDYLKRFSSSGNDESPLNESGDNGDWNVSKEGEEQSVTSFDLPSFHEPCAIVSDVNVGICETSVFRNVEREVVGEKNGGNERLNHSESELTGKEGDSDPILAQDKPCVDGTSNAFRKLLDIEEVDYLKQFYKSGNEESPLNESRDNGILNASKDGEDQSAASFYLPRSHEPCATTSGVNAGLCEISIFRNVEGDVVGEKNERNERLNHSDGGFIVQQKEEEPIIVAPVCTLNSEVTIEQSIDAVNNHSTMNTIPLDPRSTGKKKSRSDEKQKTKTDWESLRRMYCKTGGKETNENNTDAVDWDAVRRATVEEIAETIVERGMNNVLAARIKEFLERMVKDHGTIDLEWLRDVPPDKAKEFLLSIQGIGLKSVECVRLLTLHHLAFPVDTNVGRVATRLGWVPLQPLPEEVQIHLLNSYPMMDSIQKYLFPRLCTLDQRTLYELHYQLITFGKVFCTKKSPNCNACPMRAECRHYASAFASARLALPGPKESNVTSIVPSANEQNHSMLNTPPSSFDLELDNLGSRYHAQNSEPIIEVPPSLEPSYYDRNSEPIIEVPQSLEPSYHDRNSEPIIEVPPSPEPEPIIRDIEDYYCESDDEIPTIRLNTEEFREALKDTIYVNSLSLPEAEMSKALVALTAQAASIPVPRMKYVAKLRTVHYVYELPDYHPSLAGFDEREHDDPTPYLLAIWLPGETSNSLEYNNDQEETVKGTVLIPCRTANRGKFPLNGTYFQVNEVFADDETSQIPMDVPRCQLWNLSRRYLGCGTSATSIFKALSMSDIQRCFWKGSICVRGFNRKTRQPRPLHRRFHISTTAIAAENKRTAGKR 1739
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00212 1739 MobiDBLite consensus disorder prediction 989 1013 - -
Sain12g00212 1739 Gene3D - 1289 1403 IPR023170 -
Sain12g00212 1739 SUPERFAMILY DNA-glycosylase 658 1389 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Sain12g00212 1739 MobiDBLite consensus disorder prediction 920 946 - -
Sain12g00212 1739 MobiDBLite consensus disorder prediction 1172 1188 - -
Sain12g00212 1739 FunFam DNA glycosylase-AP lyase ROS1 1288 1396 - -
Sain12g00212 1739 Gene3D Hypothetical protein; domain 2 1182 1288 - -
Sain12g00212 1739 MobiDBLite consensus disorder prediction 1474 1493 - -
Sain12g00212 1739 MobiDBLite consensus disorder prediction 989 1015 - -
Sain12g00212 1739 SMART ccc3 1367 1387 IPR003651 GO:0051539(InterPro)
Sain12g00212 1739 MobiDBLite consensus disorder prediction 213 232 - -
Sain12g00212 1739 MobiDBLite consensus disorder prediction 84 232 - -
Sain12g00212 1739 MobiDBLite consensus disorder prediction 140 158 - -
Sain12g00212 1739 MobiDBLite consensus disorder prediction 1161 1188 - -
Sain12g00212 1739 Pfam RRM in Demeter 1623 1723 IPR028925 -
Sain12g00212 1739 SMART endo3end 1196 1366 IPR003265 GO:0006284(InterPro)
Sain12g00212 1739 MobiDBLite consensus disorder prediction 166 180 - -
Sain12g00212 1739 CDD ENDO3c 1214 1327 IPR003265 GO:0006284(InterPro)
Sain12g00212 1739 MobiDBLite consensus disorder prediction 921 946 - -
Sain12g00212 1739 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 90 1735 IPR044811 GO:0019104(InterPro)|GO:0035514(InterPro)|GO:0141166(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00212 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:3801436 Sain8g01439 Sain-Chr8:59650837 dispersed