AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00214 ATGGCTGCTCAGGCTGTAGAAGGTGCAGCCGTGACGGCTCTGCGATCGGTTTTTCACCGTGTCCGGCAAGCGGCTGAGAGATCTGGCCGCCATGCGGATGATGTGCGAGCGGTGGCTGTCAGCAAGACCAAACCTCTATCTCTCATCCGCCAACTCTACGACGCTGGACACCGCTGTTTTGGGGAAAACTATGTCCAAGAGTTCATCGAAAAGGCTCCTCAGCTTCCCAAGGACATTGACTGGCACTTTATTGGGCATTTGCAGAGCAATAAAGCAAAATCCCTACTTGCCGCTGTTCCAAATCTGTCGATGGTACAAGGTGTAGATAACGAGAAGATTGCAAATCACCTCGATCGTGCAGTTTCAAGCGTTGGAAGAAAGCCGTTGCCGGTTATGGTCCAAGTAAATACCAGTGGAGAGATATCGAAATCTGGGATCGAACCAACAAGTTGTGTAGAGCTTGTGAAGCACGTTAAGTTTAGCTGCCCAAACCTCGTGTTTTCTGGCTTAATGACTATTGGAATGCCGGATTATACATCCACTCCAGAGAACTTCAGGACTCTATCAAGATGCAGAGTTGAGATCTGCAAGGAACTTGGGATGCCGGAGAACGAGTGTGAATTGTCAATGGGCATGTCTGGCGACTTTGAACTAGCGATTGAAATGGGCAGCACAAACGTAAGGATTGGATCAACGATTTTTGGACCGAGGGAGTATCCAAAGAAACAGCAGCCGCAATGA 741 48.99 MAAQAVEGAAVTALRSVFHRVRQAAERSGRHADDVRAVAVSKTKPLSLIRQLYDAGHRCFGENYVQEFIEKAPQLPKDIDWHFIGHLQSNKAKSLLAAVPNLSMVQGVDNEKIANHLDRAVSSVGRKPLPVMVQVNTSGEISKSGIEPTSCVELVKHVKFSCPNLVFSGLMTIGMPDYTSTPENFRTLSRCRVEICKELGMPENECELSMGMSGDFELAIEMGSTNVRIGSTIFGPREYPKKQQPQ 246
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00214 246 SUPERFAMILY PLP-binding barrel 11 235 IPR029066 -
Sain12g00214 246 PIRSF YBL036c-PLPDEIII 1 243 IPR011078 GO:0030170(InterPro)
Sain12g00214 246 Gene3D Alanine racemase 2 246 IPR029066 -
Sain12g00214 246 Hamap Pyridoxal phosphate homeostasis protein. 12 236 IPR011078 GO:0030170(InterPro)
Sain12g00214 246 FunFam Pyridoxal phosphate homeostasis protein 2 244 - -
Sain12g00214 246 CDD PLPDE-III-YBL036c-euk 14 235 - -
Sain12g00214 246 PANTHER PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN 4 241 IPR011078 GO:0005622(PANTHER)|GO:0030170(InterPro)|GO:0030170(PANTHER)
Sain12g00214 246 ProSitePatterns Uncharacterized protein family UPF0001 signature. 81 95 IPR011078 GO:0030170(InterPro)
Sain12g00214 246 Pfam Alanine racemase, N-terminal domain 16 236 IPR001608 -
Sain12g00214 246 NCBIfam YggS family pyridoxal phosphate-dependent enzyme 17 237 IPR011078 GO:0030170(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00214 K06997 PLP dependent protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:3843981 Sain14g02419 Sain-Chr14:103091036 dispersed