Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00214 | ATGGCTGCTCAGGCTGTAGAAGGTGCAGCCGTGACGGCTCTGCGATCGGTTTTTCACCGTGTCCGGCAAGCGGCTGAGAGATCTGGCCGCCATGCGGATGATGTGCGAGCGGTGGCTGTCAGCAAGACCAAACCTCTATCTCTCATCCGCCAACTCTACGACGCTGGACACCGCTGTTTTGGGGAAAACTATGTCCAAGAGTTCATCGAAAAGGCTCCTCAGCTTCCCAAGGACATTGACTGGCACTTTATTGGGCATTTGCAGAGCAATAAAGCAAAATCCCTACTTGCCGCTGTTCCAAATCTGTCGATGGTACAAGGTGTAGATAACGAGAAGATTGCAAATCACCTCGATCGTGCAGTTTCAAGCGTTGGAAGAAAGCCGTTGCCGGTTATGGTCCAAGTAAATACCAGTGGAGAGATATCGAAATCTGGGATCGAACCAACAAGTTGTGTAGAGCTTGTGAAGCACGTTAAGTTTAGCTGCCCAAACCTCGTGTTTTCTGGCTTAATGACTATTGGAATGCCGGATTATACATCCACTCCAGAGAACTTCAGGACTCTATCAAGATGCAGAGTTGAGATCTGCAAGGAACTTGGGATGCCGGAGAACGAGTGTGAATTGTCAATGGGCATGTCTGGCGACTTTGAACTAGCGATTGAAATGGGCAGCACAAACGTAAGGATTGGATCAACGATTTTTGGACCGAGGGAGTATCCAAAGAAACAGCAGCCGCAATGA | 741 | 48.99 | MAAQAVEGAAVTALRSVFHRVRQAAERSGRHADDVRAVAVSKTKPLSLIRQLYDAGHRCFGENYVQEFIEKAPQLPKDIDWHFIGHLQSNKAKSLLAAVPNLSMVQGVDNEKIANHLDRAVSSVGRKPLPVMVQVNTSGEISKSGIEPTSCVELVKHVKFSCPNLVFSGLMTIGMPDYTSTPENFRTLSRCRVEICKELGMPENECELSMGMSGDFELAIEMGSTNVRIGSTIFGPREYPKKQQPQ | 246 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00214 | 246 | SUPERFAMILY | PLP-binding barrel | 11 | 235 | IPR029066 | - | |
| Sain12g00214 | 246 | PIRSF | YBL036c-PLPDEIII | 1 | 243 | IPR011078 | GO:0030170(InterPro) | |
| Sain12g00214 | 246 | Gene3D | Alanine racemase | 2 | 246 | IPR029066 | - | |
| Sain12g00214 | 246 | Hamap | Pyridoxal phosphate homeostasis protein. | 12 | 236 | IPR011078 | GO:0030170(InterPro) | |
| Sain12g00214 | 246 | FunFam | Pyridoxal phosphate homeostasis protein | 2 | 244 | - | - | |
| Sain12g00214 | 246 | CDD | PLPDE-III-YBL036c-euk | 14 | 235 | - | - | |
| Sain12g00214 | 246 | PANTHER | PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN | 4 | 241 | IPR011078 | GO:0005622(PANTHER)|GO:0030170(InterPro)|GO:0030170(PANTHER) | |
| Sain12g00214 | 246 | ProSitePatterns | Uncharacterized protein family UPF0001 signature. | 81 | 95 | IPR011078 | GO:0030170(InterPro) | |
| Sain12g00214 | 246 | Pfam | Alanine racemase, N-terminal domain | 16 | 236 | IPR001608 | - | |
| Sain12g00214 | 246 | NCBIfam | YggS family pyridoxal phosphate-dependent enzyme | 17 | 237 | IPR011078 | GO:0030170(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00214 | K06997 | PLP dependent protein |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:3843981 | Sain14g02419 | Sain-Chr14:103091036 | dispersed |