AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00216 ATGAACATTGAAGATTCAGTTGCCGCTGTTGAATCGATCTTAAGGTACACGTTTAAGAACAAGTGTTTGTTGGAAGAGGCCTTAACGCATCCGTCTTACTCCGATAGTCCTTCGTATCAACGTCTCGAGTTCGTCGGCGATGCTGTCCTTGGACTCGCGATTACCAATTTTGTTTACGTCAATTATCCTGATCTCGATCCTGGTCAACTAACTCTTCTCCGTGCCGCCAATGTCGGTACCGAGAAGCTCGCGCGGGTTGCCGTTAACCACGGCCTTCACAAATACGTCCGCCACAGAGCCGCCGCTCTCCATAACAAGGTTAGGGAATTTGTGATTGCGGTTCAGGAAGAAGATGATGTGGTTGTTCACGGTGGACATATGAAAGCCCCTAAGGTGCTTGCTGATATTGTGGAATCGGTGGCTGGAGCCGTGTATATTGATTGTGGTTCAAACTTGCAAATGCTATGGATAATCATCAGAGAGCTACTTGAACCTATTGTGATGTTAAATGTCATCGAGAAACAACCGCAGCCTATTACATTGCTGTATGAGACATGTCAGAAGGATAAGAAGGATGTTATCATACGGCACTGGAGGAAAGGTGACAGAAACATCACGAGTGTTTATGTAGATGGCAGATTTGTTGCCTCTGGTTCTTCAGAGAACAAAGAGAATGCAAAGCTTCATGCAGCCGAGGTAGCTTTGTCCAAGTTAACGAGCTCCAAAAGCAGCGACCCAATGAGTATGCAAATGTATGATGATTTTAGTAAAACCATTGAGATTGAACGTGCCAAACAGAGAGTATCTGAGCTTTGCAATAAGAAAAGGTGGTCGAAGCCAATTTACAGGCTTGAGCATCAGTCGGGACCTGCACATGAAAGAAGATATACATCGTCGGTTCAAATTAAAGTCAGTGACGTGATTGTTGGTGTGGTGGGAGATGAGAGGCCAAAAGTTAAGGAGGCGGAGACTTCTGCAGCCGTGGCAATGCTTTGTGCTCTACGAGAATCTGGATTTATATGA 1023 45.36 MNIEDSVAAVESILRYTFKNKCLLEEALTHPSYSDSPSYQRLEFVGDAVLGLAITNFVYVNYPDLDPGQLTLLRAANVGTEKLARVAVNHGLHKYVRHRAAALHNKVREFVIAVQEEDDVVVHGGHMKAPKVLADIVESVAGAVYIDCGSNLQMLWIIIRELLEPIVMLNVIEKQPQPITLLYETCQKDKKDVIIRHWRKGDRNITSVYVDGRFVASGSSENKENAKLHAAEVALSKLTSSKSSDPMSMQMYDDFSKTIEIERAKQRVSELCNKKRWSKPIYRLEHQSGPAHERRYTSSVQIKVSDVIVGVVGDERPKVKEAETSAAVAMLCALRESGFI 340
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00216 340 ProSitePatterns Ribonuclease III family signature. 40 48 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Sain12g00216 340 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 164 240 IPR014720 -
Sain12g00216 340 Gene3D Ribonuclease III domain 2 175 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Sain12g00216 340 PANTHER DICER-RELATED 5 312 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Sain12g00216 340 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 263 336 IPR014720 -
Sain12g00216 340 ProSiteProfiles Ribonuclease III family domain profile. 7 149 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Sain12g00216 340 Gene3D - 176 249 - -
Sain12g00216 340 Gene3D - 269 336 - -
Sain12g00216 340 SMART riboneu5 22 168 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Sain12g00216 340 Pfam Ribonuclease III domain 40 149 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Sain12g00216 340 Pfam Double-stranded RNA binding motif 178 238 IPR014720 -
Sain12g00216 340 SUPERFAMILY RNase III domain-like 6 166 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Sain12g00216 340 SUPERFAMILY dsRNA-binding domain-like 131 239 - -
Sain12g00216 340 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 264 334 - -
Sain12g00216 340 SUPERFAMILY dsRNA-binding domain-like 246 334 - -
Sain12g00216 340 FunFam Endoribonuclease dicer-like 1 2 170 - -
Sain12g00216 340 CDD RIBOc 23 167 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Sain12g00216 340 SMART DRBM-3 178 239 IPR014720 -
Sain12g00216 340 SMART DRBM-3 264 335 IPR014720 -
Sain12g00216 340 Hamap Ribonuclease 3 [rnc]. 10 331 IPR011907 GO:0003723(InterPro)|GO:0004525(InterPro)|GO:0006364(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00216 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:3875733 Sain1g01751 Sain-Chr1:108326484 dispersed
Sain Sain-Chr12:3875733 Sain12g00217 Sain-Chr12:3904164 tandem