AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00229 ATGCAGGGCAGCCATACCCATACTTCCAACTTGAATATCACTTTCTTTGGAAACCACCATCTTTCATTAATGGCCACACACTCATTCATTCAACTCGCCCCCAACCTAACTCCGTCATCCTCCGCCCCCGCCACTTCCCTTTCTCCGTTCTTCTTCAAAACATGCCGTTTTCCTCGCCCCCCAACACGACGTCGTCCTTCCGCCGTCTCTTGTTCTTTTTCCTCAATGGAGTCTGCAAAGATTAAGGTTGTCGGTGTCGGCGGCGGCGGCAACAATGCCGTTAACCGCATGATTGGTAGCGGATTGCAGGGTGTTGATTTTTACGCCATAAACACGGATTCACAAGCCCTTCTGCAATCTGTTGCAGAAAACCCAATTCAAATCGGAGAGCTTTTGACTCGCGGACTTGGTACTGGTGGGAATCCGCTTTTAGGAGAACAGGCTGCAGAGGAATCAAAAGAAGCGATTGGGAATGCTCTTAAAGGATCAGATCTTGTGTTCATAACAGCAGGTATGGGTGGTGGTACAGGTTCTGGTGCTGCTCCGGTTGTAGCCCAAATAGCAAAAGAAGCCGGATATTTAACCGTTGGTGTCGTAACTTACCCATTCAGCTTCGAAGGACGCAAAAGATCAGTGCAGGCTTTGGAGGCTATTGAGAAGCTGCAAAAGAACGTTGACACGCTTATAGTGATCCCGAATGATCGTTTGTTGGATATTGCTGATGAGCAGACACCGCTTCAAGATGCTTTTCTTCTTGCTGATGATGTACTCCGTCAAGGAGTTCAAGGAATTTCGGATATAATTACAATACCTGGGCTGGTAAACGTGGATTTTGCGGATGTTAAAGCGGTGATGAAAGACTCTGGAACCGCAATGCTTGGCGTGGGGGTTTCATCCAGCAAAAACCGAGCTGAAGAAGCAGCTGAACAAGCAACTCTTGCTCCTTTAATTGGATCGTCAATCAAATCCGCTACTGGAGTTGTTTATAACATTACCGGAGGGAAGGATATAACTCTGCAAGAAGTTAATAGGGTCTCTCAGGTGGTAACAAGTCTAGCAGATCCATCAGCCAACATTATATTCGGGGCTGTCGTGGACGAAAGATACAACGGTGAGATTCATGTGACAATCGTTGCTACGGGATTTGCACAATCTTTTCAGAAATCTCTTCTGGCTGACCCAAAAGGAGCAAAGCTTGTTGATAGAAATCAAGAAACCACACAACCTTCGATTCCCGTGACCACACCCTCTTCCTCTCCGTCTCGCTCTAGGAAACTTTTCTTTTAA 1287 46.78 MQGSHTHTSNLNITFFGNHHLSLMATHSFIQLAPNLTPSSSAPATSLSPFFFKTCRFPRPPTRRRPSAVSCSFSSMESAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSVAENPIQIGELLTRGLGTGGNPLLGEQAAEESKEAIGNALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSVQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIKSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDERYNGEIHVTIVATGFAQSFQKSLLADPKGAKLVDRNQETTQPSIPVTTPSSSPSRSRKLFF 428
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00229 428 Gene3D Tubulin-FtsZ, GTPase domain 71 287 IPR036525 -
Sain12g00229 428 SMART Tubulin-4 80 272 IPR003008 GO:0005525(InterPro)
Sain12g00229 428 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 173 179 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sain12g00229 428 SMART Tubulin-C-4 274 391 IPR018316 -
Sain12g00229 428 SUPERFAMILY Tubulin C-terminal domain-like 274 388 IPR008280 -
Sain12g00229 428 CDD FtsZ-type1 96 381 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Sain12g00229 428 Pfam FtsZ family, C-terminal domain 289 382 IPR024757 -
Sain12g00229 428 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 68 408 IPR045061 GO:0003924(PANTHER)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0010020(PANTHER)|GO:0032153(PANTHER)|GO:0048285(PANTHER)|GO:0051301(PANTHER)
Sain12g00229 428 NCBIfam cell division protein FtsZ 74 390 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Sain12g00229 428 ProSitePatterns FtsZ protein signature 1. 111 145 IPR020805 GO:0005525(InterPro)
Sain12g00229 428 Hamap Cell division protein FtsZ [ftsZ]. 76 396 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Sain12g00229 428 MobiDBLite consensus disorder prediction 404 428 - -
Sain12g00229 428 FunFam Cell division protein FtsZ 1, chloroplastic 245 382 - -
Sain12g00229 428 PRINTS Cell division protein FtsZ signature 165 185 IPR003008 GO:0005525(InterPro)
Sain12g00229 428 PRINTS Cell division protein FtsZ signature 279 300 IPR003008 GO:0005525(InterPro)
Sain12g00229 428 PRINTS Cell division protein FtsZ signature 256 278 IPR003008 GO:0005525(InterPro)
Sain12g00229 428 PRINTS Cell division protein FtsZ signature 193 214 IPR003008 GO:0005525(InterPro)
Sain12g00229 428 SUPERFAMILY Tubulin nucleotide-binding domain-like 79 275 IPR036525 -
Sain12g00229 428 ProSitePatterns FtsZ protein signature 2. 164 185 IPR020805 GO:0005525(InterPro)
Sain12g00229 428 Gene3D - 288 393 IPR037103 -
Sain12g00229 428 Pfam Tubulin-FtsZ family, GTPase domain 80 240 IPR003008 GO:0005525(InterPro)
Sain12g00229 428 FunFam Cell division protein FtsZ 1, chloroplastic 73 287 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00229 K03531 cell division protein FtsZ
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:4094236 Sain3g03702 Sain-Chr3:216785600 dispersed
Sain Sain-Chr12:4094236 Sain15g00749 Sain-Chr15:65269846 transposed