AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00235 ATGAAGATGAACACCAAATCCCTAAAACTCATCATCTCTCTATTCCTCCTCAATTCCATAACCATTTATCTCTACTTCTCTTCTCACCCTGATTACTTCCGCCGTCCTCCTCCTCCTCCTCCCCCTTCAACCCCAAACCCTCGCCATCTCCGTTCCTCTTTTCCCCATCACACAGCTCTCGTTTCTTTGTCTAATTCCAATAAACCATGGCCAATTTTGCCATCTTACCTTCCATGGTCTTTAACCCCTAACATCGCCTCTGCATCTTGTGAAGCCTATTTTGGTAATGGATTCACTCGCGCCCTCCATCTGCTCAAGCCGTCGCCGGAGATTTACCGGAAATCCAGTAACGGCGGAGGCGGGGGAGGATGGTTTAGGTGTTTTTATAGTCAGACATTGCGGAGTTCCATATGTGAAGGCGGGAGGTTGCGGATGCATCCTGAGAAGATTAAGATGTCGATCGGCGGTGAGAAATTGGAGAGTGTGATTGGGAGGGGGGAGGAGGAAGAGTTGCCGGAGTTTGAATCTGGAGCTTTCGATTTGGAAGTTGGTGAGAGATCTAAGAGTCATGGTAAGAAGCTTGCTACTGAGGGTTTTTTGAATGATTATTTACAGAAAGAGCAGATCTCGAGGCATACTATGCGAGAGTTGATTGATTCGATTCAATTAGTTGGCGCCAATGAATTCGAATGCTCTCAGTGGATTGAGGAGCCGACGCTTTTGGTCACTCGCTTCGAGTATGCAAATCTTTTTCACACGGTCACGGATTGGTACAGCGCCTACGTGTCTTCCAGAGTTACTGGCTTGCCAAACCGACCTCAAGTGGTTTTTGTAGATGGTCACTGCATGACACCATTAGAAGAAACATGGAAAGCTGTGTTCTCGGGTCTAAGATACGCTAAAAATTTCAGCGGACCAGTTTGCTTTCGTCATGCTATCCTCTCGCCTTTAGGATACGAAACAGCCATGTTCAAGGGTCTGTCTGAAAACATCGATTGTTACGGATCACCCGCCCATGATTTATGGCAAAACCCCGATGAAAAGAAAACCGCCAGAATCTCAGAATTCGGAGAGATGATACGAGCTGCTTTTGCGCTTCCGTTACAAAGACACCACCAGAACTCAAAGTCAGGATCACGAAATCATAACATCCTCTTCGTCCGCCGTGAAGATTATTTGGCTCATCCCCGCCATGGCGGCAAGGTGCAATCGAGGCTTAGCAATGAAGAAGAAGTGTTTGATGCGTTAAAGAGCTGGTCATGGAATCATACAGATTGCAAATTGAGCTTAATCAACGGGCTTTTTGGGCATATGTCAATGAAAGAGCAAGTGAGAGCGATTCAGGATGCGTCAGTTATCATTGGTGCTCACGGGGCGGGGCTGACTCACATAGTGTCGGCAACACCTGAAGCGGAGATTTTGGAGATCGTGTCGAGTGAGTTTCGGAGGCCTCATTTTGAATTAATTTCTCAGTGGAAAGGACTGAAATACCACCCAATATATCTGGCTGGATCTCATGCTAATCCAACGGTGGTTATTGAGAAACTTAGGGGTATTTTGAAGAGCTTAGGATGTTGA 1578 46.64 MKMNTKSLKLIISLFLLNSITIYLYFSSHPDYFRRPPPPPPPSTPNPRHLRSSFPHHTALVSLSNSNKPWPILPSYLPWSLTPNIASASCEAYFGNGFTRALHLLKPSPEIYRKSSNGGGGGGWFRCFYSQTLRSSICEGGRLRMHPEKIKMSIGGEKLESVIGRGEEEELPEFESGAFDLEVGERSKSHGKKLATEGFLNDYLQKEQISRHTMRELIDSIQLVGANEFECSQWIEEPTLLVTRFEYANLFHTVTDWYSAYVSSRVTGLPNRPQVVFVDGHCMTPLEETWKAVFSGLRYAKNFSGPVCFRHAILSPLGYETAMFKGLSENIDCYGSPAHDLWQNPDEKKTARISEFGEMIRAAFALPLQRHHQNSKSGSRNHNILFVRREDYLAHPRHGGKVQSRLSNEEEVFDALKSWSWNHTDCKLSLINGLFGHMSMKEQVRAIQDASVIIGAHGAGLTHIVSATPEAEILEIVSSEFRRPHFELISQWKGLKYHPIYLAGSHANPTVVIEKLRGILKSLGC 525
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00235 525 PANTHER PUTATIVE-RELATED 11 525 IPR007657 GO:0016757(InterPro)
Sain12g00235 525 Pfam Glycosyltransferase 61 373 473 IPR049625 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00235 K03714 glycoprotein 2-beta-D-xylosyltransferase [EC:2.4.2.38]
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Event-related genes

Select Gene_1 Gene_2 Event_name
138680 Sain12g00235 Sain9g00090
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:4250655 Sain9g00090 Sain-Chr9:2290468 wgd