AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00236 ATGTTATGTCTTTCCACACTCGGAAAACCGTGCCTTTCAACAACCGGAAAACCCACCAAGAAGCTTCGCACTCCGGCGGAGGTGGTGGACAAGACTCGATCCCTTCTCCTAAGTTCCAAAAACACCCTCAACGTCACCTCCCAGATGACCGAGTTGAGCTCACTAGTTAGGGAGTTAAAGTTGATTCTTTATGGTGATGATAACTCCGAGCCATCTGAGGAAGCTTGTGCCCAGTTGACACGGGAGTTCTTTAAAGAAGACACATTGCGTCTCCTCGTGATCTTTCTTCCCAAGTTGAACTTAGAGACCCGTAAAGATGCCACCCAAGTTGTTGCAAGTTTGCAGAGGCAACCCTTGCCATCGCGCTTTCAAGCTTCAAGATATTTAGAAGCTAATCTAGATCTTGTGGATATTTTGATATCCGGATACGAGGATCCTCAACTAGCTCTCCATTATGGTAGGATGTTAAAGGAGTGCCTACGTCATCAAATTGTTGCAAGTTACTTATTGGAACCAAGTCAACTGAAGAAATTCTTTGATTATATACAACATCCGAGTTTTGATATTGCTGCAGATGCCGCAGATACATTCAAGGATCTTTTGACTAGACATAAGTCAACTGTAGCTGAATCTCTGTCGAAAAACTATTGTTGGTTTTTTACCGAGTTTAACCAAAGGCTACTGAAATCTGCAAACTATATCACCAGAAGACAAGCTGTTAAGCTATTGGGATGCATATTGCTTGATCGTTCGAATTCTGATGTTATGACACGCTACGTAAACTCAAAAGACAACCTAATAATTCTGATGAATCTTCTAAGGGATCCAAGTAGGAGCATCCAAATAGATGCTTTTCATGTGTTCAAGCTGTTTGTAGCAAATAAAAACAAGCCACCTGAAATAGTGAGCATACTCGTTGCAAACAGAAGCAAGGTTATACGTTTACTTGGTGCCTTTGTCTATACAGACGATCAAGTGTTTGAGACAGACAAAATTCAGGTGGTGGATGAACTCACTGTATTGGAGCTTGAAGACTAA 1038 41.71 MLCLSTLGKPCLSTTGKPTKKLRTPAEVVDKTRSLLLSSKNTLNVTSQMTELSSLVRELKLILYGDDNSEPSEEACAQLTREFFKEDTLRLLVIFLPKLNLETRKDATQVVASLQRQPLPSRFQASRYLEANLDLVDILISGYEDPQLALHYGRMLKECLRHQIVASYLLEPSQLKKFFDYIQHPSFDIAADAADTFKDLLTRHKSTVAESLSKNYCWFFTEFNQRLLKSANYITRRQAVKLLGCILLDRSNSDVMTRYVNSKDNLIILMNLLRDPSRSIQIDAFHVFKLFVANKNKPPEIVSILVANRSKVIRLLGAFVYTDDQVFETDKIQVVDELTVLELED 345
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00236 345 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 20 342 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Sain12g00236 345 Gene3D - 18 341 IPR011989 -
Sain12g00236 345 SUPERFAMILY ARM repeat 24 331 IPR016024 -
Sain12g00236 345 Pfam Mo25-like 21 341 IPR013878 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00236 K08272 calcium binding protein 39
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:4255294 Sain1g01701 Sain-Chr1:107020562 dispersed
Sain Sain-Chr12:4255294 Sain3g00465 Sain-Chr3:11058067 wgd