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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00244 ATGGATCAATCACTTTCAGAGGGAACACAAACACAAAAAAACACTGATTGGGAGGTAGCACTGCATCGTTTCGAAACCCTAATTGCAACCGCAAATGAGGCTTCGCAATTGCAGGCTATAATCAAGCTTTCTCGCTTCTATAACCGTGCTCCCGAGAGAATATTGGTATCCACCGTGCCGATCCTAGTCAACCTTCTCGACACATCATGCACAACTACAACTAACGCCATCTTGAAAGCCTCTGCGCACTGTTTGAAGTGCATCGCTTGTGAAGGGGAAGGCAGGCTGGCCGTAATCATCGGCCAATCAGGAGCCATTCATCGCATCCTTTGCCTTTTACCTCAATCCGAACTCGGTTTACAAAAAGTCCTTCTGAAATGCCTTCGAAATCTTGTAGCGTTTAATGGTCCTAATCGGGTTAATGTGGTTAGAATCGGTGGGCTAAAAGTCATCATCGATATGTTAAATTCTTGCCCTAACGTTTTACGACCTATCTTGTTGGATATTTTGAGTGCACTTGCGCTTTTAAGAGAGGTTCGAAGGTCCATTTACAATTTGCGGGTGGTTCGTTTACTCGTTGAATCAGGTAAAGTCGGGAACATGGTTTCAAGGACTCGTGCTGCTCAGGCAATCGGGTTACTCGGGCTCGTTAAAAAAGCAAGACGCGATCTTGTTAATGCGGGTGCCATAGAGGTTCTCGTTGATTTGCTTCGGAATGGGAACAACTCGACAAAGATAGTTGCGGGTAACGCGTTAGGGGTAATATCGTCACACGTTGATTACATTCGACCCGTTGCTGAACGCGGTGTCATTCCGTTATACGCCGAGCTTCTTCAAGAACGGGACCCGTTGGGGAAGGAGATTGCAGAGGATGTGTTTTGCATTTTAGCCGTTAGTGATATTAACGCCATTACGATTGTTGAGCATTTGGTGACGATTATGAGAGGAAACGATAACGAAAGTATAGCAGCAGCTGCCGATGTTTTGTGGGACCTTTCGAGTTATAAGCATGTATTGCCTTTTATTTATAGATCTGGTGCAATTTCGCTTTTGGTGGAGCTTTTGAGAAGTAGTGAGGATAGTAACGTTAGGGAGAACGTTTGTGGGGCGATTGCCCAGTTGAGTTGTAACGGTGCTGAACGGGGTTCGATTGCTGATTTAGGGGGGATTTCTCTTTTGATTAGCGTGTTAGAAGATGAGTCGGAGGAGGTCAGAGATAATGCCGCTCAGACACTTGTTAACTTTTACGAGGACGTGTTATTTCGCGATAGAATGTCGGGTGCAGTGGGTCATCCTTCATTCTTGAGCATGCAAGCGAGGATGGTTCAGACACGTGGGGCTGAATTACGTATGGCTGATTCAGTCAGACAGATGACTCTTGATGAGTTAACTTGGAATCCTGGTCTGTAA 1410 45.67 MDQSLSEGTQTQKNTDWEVALHRFETLIATANEASQLQAIIKLSRFYNRAPERILVSTVPILVNLLDTSCTTTTNAILKASAHCLKCIACEGEGRLAVIIGQSGAIHRILCLLPQSELGLQKVLLKCLRNLVAFNGPNRVNVVRIGGLKVIIDMLNSCPNVLRPILLDILSALALLREVRRSIYNLRVVRLLVESGKVGNMVSRTRAAQAIGLLGLVKKARRDLVNAGAIEVLVDLLRNGNNSTKIVAGNALGVISSHVDYIRPVAERGVIPLYAELLQERDPLGKEIAEDVFCILAVSDINAITIVEHLVTIMRGNDNESIAAAADVLWDLSSYKHVLPFIYRSGAISLLVELLRSSEDSNVRENVCGAIAQLSCNGAERGSIADLGGISLLISVLEDESEEVRDNAAQTLVNFYEDVLFRDRMSGAVGHPSFLSMQARMVQTRGAELRMADSVRQMTLDELTWNPGL 469
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00244 469 SUPERFAMILY ARM repeat 182 416 IPR016024 -
Sain12g00244 469 SMART arm-5 92 133 IPR000225 GO:0005515(InterPro)
Sain12g00244 469 SMART arm-5 217 257 IPR000225 GO:0005515(InterPro)
Sain12g00244 469 SMART arm-5 335 376 IPR000225 GO:0005515(InterPro)
Sain12g00244 469 SMART arm-5 299 334 IPR000225 GO:0005515(InterPro)
Sain12g00244 469 SMART arm-5 377 417 IPR000225 GO:0005515(InterPro)
Sain12g00244 469 SMART arm-5 258 298 IPR000225 GO:0005515(InterPro)
Sain12g00244 469 Gene3D - 167 420 IPR011989 -
Sain12g00244 469 SUPERFAMILY ARM repeat 24 260 IPR016024 -
Sain12g00244 469 Pfam Armadillo-beta-catenin-like repeat 342 375 IPR000225 GO:0005515(InterPro)
Sain12g00244 469 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 320 418 - -
Sain12g00244 469 Pfam HEAT repeat 391 417 IPR000357 GO:0005515(InterPro)
Sain12g00244 469 Gene3D - 9 166 IPR011989 -
Sain12g00244 469 ProSiteProfiles Armadillo-plakoglobin ARM repeat profile. 346 389 IPR000225 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00244 - -
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain1g00255 ACH 490 754 U-box gene family AT3G54790 28.777 8.57e-20 91.7
Sain1g00538 ACH 7 402 U-box gene family AT2G35930 33.413 1.41e-69 224.0
Sain1g01055 . 334 607 U-box gene family AT1G23030 33.451 1.35e-31 122.0
Sain1g01292 ACH 1 725 U-box gene family AT1G29340 62.534 0.0 836.0
Sain1g01555 . 6 369 U-box gene family AT4G21350 60.218 3.74e-140 402.0
Sain1g01702 ACH 541 823 U-box gene family AT2G23140 51.034 2.17e-79 260.0
Sain2g00055 . 1 832 U-box gene family AT2G45910 50.057 0.0 826.0
Sain2g00098 ACH 490 754 U-box gene family AT3G54790 28.674 7.98e-17 82.0
Sain2g00230 . 560 742 U-box gene family AT2G23140 37.037 3.95e-21 97.4
Sain2g00313 . 26 766 U-box gene family AT1G76390 28.457 4.09e-42 164.0
Sain2g00388 . 350 501 U-box gene family AT5G67530 41.875 1.10e-32 130.0
Sain2g01327 . 237 449 U-box gene family AT2G33340 26.106 5.44e-06 49.3
Sain2g01579 . 541 819 U-box gene family AT2G23140 31.333 4.80e-24 104.0
Sain2g01583 . 308 428 U-box gene family AT2G33340 29.839 3.89e-07 51.2
Sain3g00343 ACH 734 805 U-box gene family AT2G28830 44.231 1.02e-15 79.0
Sain3g00434 ACH 603 805 U-box gene family AT2G23140 24.272 3.02e-11 64.3
Sain3g00669 . 1 421 U-box gene family AT1G49780 65.558 0.0 535.0
Sain3g01048 . 350 501 U-box gene family AT5G67530 41.25 1.67e-32 130.0
Sain3g01591 . 353 493 U-box gene family AT5G67530 45.752 9.91e-32 117.0
Sain3g01592 . 352 491 U-box gene family AT5G67530 44.079 5.53e-29 112.0
Sain3g02492 . 242 625 U-box gene family AT1G71020 27.475 3.76e-20 94.0
Sain3g03594 . 12 640 U-box gene family AT3G46510 66.193 0.0 829.0
Sain3g03783 . 319 475 U-box gene family AT5G67530 42.614 1.34e-30 115.0
Sain3g03937 . 10 707 U-box gene family AT5G67340 39.406 2.18e-159 476.0
Sain3g04020 ACH 236 423 U-box gene family AT2G33340 29.843 2.39e-16 80.9
Sain3g04094 . 1 276 U-box gene family AT3G07370 65.468 3.64e-136 384.0
Sain3g04095 ACH 1 460 U-box gene family AT3G07360 55.647 0.0 523.0
Sain3g04372 ACH 212 544 U-box gene family AT1G23030 25.14 3.56e-14 74.3
Sain3g04450 . 357 477 U-box gene family AT5G67530 50.376 1.74e-32 130.0
Sain4g00177 . 9 686 U-box gene family AT1G60190 43.678 0.0 545.0
Sain4g00338 ACH 1 771 U-box gene family AT1G24330 62.868 0.0 979.0
Sain4g00430 . 20 459 U-box gene family AT3G11840 39.474 1.85e-96 295.0
Sain4g00433 . 6 435 U-box gene family AT5G37490 43.439 2.15e-111 333.0
Sain4g00434 . 6 431 U-box gene family AT5G37490 43.151 5.65e-105 317.0
Sain4g00695 ACH 26 610 U-box gene family AT1G23030 63.697 0.0 720.0
Sain4g00728 . 572 711 U-box gene family AT2G23140 30.282 1.69e-08 56.6
Sain4g01111 . 4 807 U-box gene family AT1G76390 63.704 0.0 1001.0
Sain4g01628 . 353 475 U-box gene family AT5G67530 47.015 3.04e-28 110.0
Sain4g02031 ACH 9 94 U-box gene family AT3G07370 29.07 3.50e-06 46.2
Sain4g02624 . 53 660 U-box gene family AT5G42340 58.173 0.0 701.0
Sain4g02797 ACH 353 491 U-box gene family AT5G67530 42.0 2.90e-27 107.0
Sain4g02857 ACH 353 477 U-box gene family AT5G67530 47.059 1.73e-29 111.0
Sain4g02858 ACH 393 477 U-box gene family AT5G67530 48.837 1.20e-17 74.7
Sain4g02862 . 353 477 U-box gene family AT5G67530 48.529 2.55e-30 114.0
Sain5g00367 . 237 517 U-box gene family AT2G33340 21.07 5.42e-07 50.1
Sain5g00571 . 588 711 U-box gene family AT2G23140 41.27 8.11e-11 65.5
Sain5g01183 ACH 563 819 U-box gene family AT2G23140 36.364 3.54e-35 135.0
Sain5g01313 ACH 1 448 U-box gene family AT3G49810 70.485 0.0 614.0
Sain5g01353 ACH 4 828 U-box gene family AT2G23140 57.738 0.0 889.0
Sain5g01472 . 602 828 U-box gene family AT2G23140 77.974 7.51e-117 350.0
Sain5g01492 . 352 493 U-box gene family AT5G67530 46.104 4.61e-32 125.0
Sain5g01666 . 2 1030 U-box gene family AT5G15400 74.349 0.0 1582.0
Sain5g01776 . 59 538 U-box gene family AT5G40140 51.807 1.85e-159 463.0
Sain5g01851 . 477 749 U-box gene family AT3G54790 34.629 2.14e-22 95.9
Sain6g00469 ACH 334 509 U-box gene family AT1G23030 30.726 6.96e-16 79.0
Sain6g00963 . 847 961 U-box gene family AT2G28830 71.795 2.59e-52 174.0
Sain7g01115 . 5 222 U-box gene family AT1G27910 37.615 1.29e-36 144.0
Sain7g01117 . 387 655 U-box gene family AT4G36550 35.662 3.47e-31 126.0
Sain7g01476 . 33 541 U-box gene family AT5G65200 52.896 3.13e-168 486.0
Sain7g01692 . 233 434 U-box gene family AT2G33340 25.108 3.44e-11 63.2
Sain7g01793 ACH 334 509 U-box gene family AT1G23030 29.05 1.08e-14 75.1
Sain7g02229 ACH 734 805 U-box gene family AT2G28830 39.423 2.04e-13 71.2
Sain8g00040 . 27 807 U-box gene family AT1G76390 28.05 4.01e-57 210.0
Sain8g00254 . 353 480 U-box gene family AT5G67530 49.64 6.07e-33 121.0
Sain8g00324 . 242 604 U-box gene family AT1G23030 26.633 1.21e-17 86.7
Sain8g00381 . 2 811 U-box gene family AT1G76390 63.177 0.0 1002.0
Sain8g00563 . 2 409 U-box gene family AT5G09800 43.341 2.13e-104 313.0
Sain8g00783 . 43 832 U-box gene family AT2G45910 43.976 0.0 665.0
Sain8g01349 . 11 624 U-box gene family AT3G54850 63.029 0.0 749.0
Sain8g01768 . 1 444 U-box gene family AT5G65920 63.288 0.0 556.0
Sain8g02667 . 1 595 U-box gene family AT5G67530 75.993 0.0 903.0
Sain8g02771 ACH 585 819 U-box gene family AT2G23140 36.1 7.68e-35 134.0
Sain9g00418 . 7 180 U-box gene family AT5G65500 31.429 3.21e-14 69.7
Sain9g00491 . 10 667 U-box gene family AT1G60190 41.379 1.94e-170 502.0
Sain9g00990 . 8 107 U-box gene family AT3G07370 29.703 1.57e-08 53.5
Sain9g01107 . 532 827 U-box gene family AT2G23140 49.338 1.21e-84 271.0
Sain9g01341 . 2 409 U-box gene family AT5G09800 43.826 2.32e-108 323.0
Sain9g01881 . 76 101 U-box gene family AT2G33340 76.923 2.38e-06 48.5
Sain9g02399 ACH 474 823 U-box gene family AT2G23140 46.409 2.08e-81 267.0
Sain9g02685 ACH 527 809 U-box gene family AT2G23140 25.253 6.64e-13 69.7
Sain9g02919 . 439 717 U-box gene family AT1G67530 28.269 7.04e-19 87.4
Sain9g02970 ACH 1 722 U-box gene family AT1G29340 61.012 0.0 788.0
Sain9g03455 . 25 797 U-box gene family AT1G20780 27.842 1.16e-57 211.0
Sain9g03546 . 112 807 U-box gene family AT1G76390 27.077 2.07e-48 182.0
Sain10g01345 . 1 82 U-box gene family AT1G29340 51.19 2.68e-12 59.7
Sain10g01632 ACH 366 621 U-box gene family AT3G46510 23.372 5.43e-08 53.9
Sain10g01753 ACH 236 507 U-box gene family AT2G33340 28.723 2.42e-19 90.9
Sain10g02100 ACH 4 410 U-box gene family AT2G35930 54.846 2.21e-164 466.0
Sain10g02334 ACH 325 422 U-box gene family AT2G33340 34.653 1.14e-07 52.0
Sain10g02646 . 346 496 U-box gene family AT5G67530 45.695 2.67e-40 154.0
Sain10g03426 . 447 742 U-box gene family AT1G67530 29.316 4.82e-27 112.0
Sain10g03698 ACH 1 768 U-box gene family AT1G27910 62.824 0.0 935.0
Sain10g03734 . 353 491 U-box gene family AT5G67530 49.65 8.29e-37 135.0
Sain10g04205 ACH 353 481 U-box gene family AT5G67530 48.571 6.01e-31 115.0
Sain10g04230 ACH 353 491 U-box gene family AT5G67530 42.667 2.70e-28 110.0
Sain10g04454 . 346 492 U-box gene family AT5G67530 28.662 9.04e-12 62.4
Sain10g04648 ACH 23 624 U-box gene family AT1G71020 59.609 0.0 665.0
Sain10g05133 . 346 500 U-box gene family AT5G67530 54.839 4.32e-57 186.0
Sain10g05197 ACH 366 621 U-box gene family AT3G46510 24.138 3.09e-09 57.8
Sain11g00129 ACH 9 102 U-box gene family AT3G07370 26.596 1.87e-06 47.0
Sain11g00325 . 22 835 U-box gene family AT4G25160 50.297 0.0 801.0
Sain11g00494 . 6 635 U-box gene family AT3G46510 38.201 1.58e-127 391.0
Sain11g00922 . 11 626 U-box gene family AT3G54850 64.286 0.0 763.0
Sain11g01371 . 239 443 U-box gene family AT1G23030 26.316 9.49e-16 80.1
Sain11g02060 ACH 7 829 U-box gene family AT2G23140 56.311 0.0 842.0
Sain11g02125 ACH 1 444 U-box gene family AT5G65920 68.243 0.0 613.0
Sain11g02275 . 9 181 U-box gene family AT4G36550 50.857 2.33e-47 176.0
Sain11g02597 . 20 786 U-box gene family AT5G65500 44.949 0.0 644.0
Sain11g02668 . 1 435 U-box gene family AT5G37490 43.665 6.66e-123 362.0
Sain11g02719 . 417 696 U-box gene family AT5G67340 27.463 2.59e-10 63.9
Sain11g03000 . 862 911 U-box gene family AT2G28830 76.0 2.21e-18 80.9
Sain11g03045 . 346 496 U-box gene family AT5G67530 50.331 1.06e-52 174.0
Sain11g03131 ACH 4 410 U-box gene family AT2G35930 54.177 2.26e-160 456.0
Sain11g03405 ACH 1 107 U-box gene family AT2G33340 73.832 3.11e-55 177.0
Sain11g03611 . 7 402 U-box gene family AT2G35930 43.237 2.53e-104 313.0
Sain11g04690 . 53 660 U-box gene family AT5G42340 55.954 0.0 669.0
Sain12g00244 . 582 671 U-box gene family AT2G23140 45.055 8.08e-10 59.3
Sain12g00369 ACH 12 80 U-box gene family AT3G07370 37.681 3.45e-08 53.5
Sain12g00519 ACH 489 748 U-box gene family AT3G54790 38.889 2.07e-35 135.0
Sain12g00810 . 353 494 U-box gene family AT5G67530 43.506 1.61e-32 126.0
Sain12g00852 . 1 421 U-box gene family AT1G49780 66.588 0.0 538.0
Sain12g00924 ACH 217 414 U-box gene family AT2G33340 24.186 3.71e-06 46.6
Sain12g01860 . 1 656 U-box gene family AT5G01830 54.148 0.0 706.0
Sain13g00156 . 230 598 U-box gene family AT1G71020 26.209 3.68e-19 91.7
Sain13g00190 . 834 960 U-box gene family AT2G28830 53.788 4.62e-35 129.0
Sain13g01251 . 340 501 U-box gene family AT5G67530 47.561 1.16e-39 149.0
Sain13g01582 . 1 81 U-box gene family AT3G07370 37.037 2.11e-09 56.6
Sain13g01962 ACH 217 414 U-box gene family AT2G33340 23.832 1.30e-06 48.1
Sain13g02166 ACH 198 403 U-box gene family AT2G33340 26.18 1.58e-08 55.1
Sain13g02212 ACH 603 799 U-box gene family AT2G23140 24.121 7.96e-12 66.2
Sain13g02401 ACH 12 187 U-box gene family AT3G07370 26.705 4.92e-08 53.1
Sain14g00065 . 357 492 U-box gene family AT5G67530 41.216 2.14e-20 94.4
Sain14g00067 . 395 627 U-box gene family AT3G46510 28.692 5.99e-17 79.3
Sain14g00120 ACH 366 621 U-box gene family AT3G46510 24.046 2.98e-10 60.8
Sain14g00195 . 236 401 U-box gene family AT1G49780 30.899 4.18e-14 70.9
Sain14g00483 ACH 7 410 U-box gene family AT2G35930 55.609 2.82e-165 469.0
Sain14g00484 ACH 7 410 U-box gene family AT2G35930 56.563 1.29e-165 469.0
Sain14g00485 . 4 410 U-box gene family AT2G35930 54.009 3.66e-155 442.0
Sain14g00822 ACH 325 413 U-box gene family AT2G33340 35.165 1.10e-07 52.0
Sain14g00928 ACH 1 515 U-box gene family AT2G33340 73.129 0.0 788.0
Sain14g01202 ACH 6 405 U-box gene family AT2G35930 30.394 1.71e-58 195.0
Sain14g01876 . 353 495 U-box gene family AT5G67530 43.137 2.96e-28 108.0
Sain14g02105 . 439 717 U-box gene family AT1G67530 28.014 1.51e-21 95.9
Sain14g02193 . 237 514 U-box gene family AT2G33340 32.862 5.59e-36 139.0
Sain14g02260 ACH 527 820 U-box gene family AT2G23140 23.588 2.65e-09 58.2
Sain15g00861 . 197 418 U-box gene family AT3G46510 43.913 9.40e-52 175.0
Sain15g01184 . 1 276 U-box gene family AT3G07370 65.108 7.74e-133 375.0
Sain15g01189 . 132 224 U-box gene family AT3G07370 44.086 1.17e-17 73.9
Sain15g01190 ACH 1 451 U-box gene family AT3G07360 47.21 4.50e-139 405.0
Sain15g01192 ACH 1 450 U-box gene family AT3G07360 45.726 4.66e-129 379.0
Sain15g01193 . 1 460 U-box gene family AT3G07360 47.046 3.45e-140 408.0
Sain15g01248 ACH 236 423 U-box gene family AT2G33340 29.63 6.08e-16 79.7
Sain15g01285 . 225 432 U-box gene family AT2G33340 24.255 8.80e-09 56.6
Sain15g01468 ACH 361 607 U-box gene family AT3G46510 25.704 3.28e-13 71.2
Sain16g00073 ACH 1 459 U-box gene family AT3G07360 53.015 4.28e-166 475.0
Sain16g00379 . 345 496 U-box gene family AT5G67530 27.632 6.17e-16 74.7
Sain16g00744 . 237 466 U-box gene family AT2G33340 25.379 3.59e-14 71.6
Sain16g00829 . 2 644 U-box gene family AT3G46510 67.802 0.0 862.0
Sain16g00837 . 45 830 U-box gene family AT2G45910 35.468 7.99e-159 482.0
Sain16g01328 . 266 507 U-box gene family AT2G33340 28.405 1.62e-14 73.9
Sain10000087.1g00006 . 862 907 U-box gene family AT2G28830 63.043 1.26e-12 60.5
Sain10000090.1g00013 . 847 961 U-box gene family AT2G28830 71.795 2.59e-52 174.0
Sain10000110.1g00011 . 847 961 U-box gene family AT2G28830 71.795 2.59e-52 174.0
Sain10000114.1g00012 . 847 961 U-box gene family AT2G28830 71.795 2.59e-52 174.0
Sain10000121.1g00008 . 847 961 U-box gene family AT2G28830 71.795 2.59e-52 174.0
Sain10000123.1g00009 . 847 961 U-box gene family AT2G28830 71.795 2.59e-52 174.0