AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00251 ATGAATGTTGGCGATCTTCACAAGGTGTTGGAAATCAGAACGTTAAAGAGGAAAGTTGGAGGAGATGAGGCTAGGAAATTCCTTGAGAAAATCGCCAAACAGGTCCAACCGATCATGCGCAAGCATAAATGGACAGTCAAAGTTCTATCCGAAATGTGTCCCAAAAACCCTAATCTTCTAGGTTTAAACGTCTGGCGTGGTGCTCATGTAAAGCTAAGACTTCGAAGACAACATACAGATTGGGGTTGGCTTCCTTTCGATGAAGTTCTTGATACAATGCTACATGAACTCTGCCATAACGCCATTAGTCCTCATAATGCTGCTTTCTACAAACTCTGGGATGAGCTCAGAAAGGAATGTGAGCAGCTGATTAGTGAAGGAATTTCCGGGGCTGGAGCTGGGTTTGATCTTCCTGGCAGACGTTTGGGTGGCTTTTCTCGTCAACCTCCTCTCTCATCTCTCCGCCAGACTGCACTTCTTGCTGCAGAAAACAGAAAACGCCAAGGATCGCTTTTACCATCTGGACCTAAACGTCTTGGTGGTGATAAATCCATCATGTCTACCCTAACTCCTGTTCAAGCAGCTGCAATGGCTGCAGAAAGGAGATTTCAAGATGATCTATGGTGTGGCCTAGAGGAAATAGTCGAAGAAGAAGAAGAAGAAAGTGGCGCTGGGGCCCCACAAGAGAACCGAAATATAAGAAACTCGGCGTCTTCTAGTGGTCTAGGTGCCGATACAAATGCCAATTCTCTGAAAAGAAATCGTCAAGAAACCAATGATCTGCCATCTCAGTGCTGTGATGGTCATCCCGAACAATGTTTTGTTGACTTAACAGAAGTCAACAAAAGAAGTCGCCAAACAGAAAAGGACGCAAATATGCCTTCATCACACGTTTTTGAGAAAAGTTGTATTGATTTAACAGGGGATGATGATGCTTCTACTAGCAATCGAAAAACAGAATGCGATACGAAGTCGTCTAGGTGGGAGTGCTTAATGTGCACGTTGCTGAATCCGACTTTAGCTCCGATCTGTGAGCTATGCGGAACCCACAAACCGAAAGCTATTGAAGACAAGTATAAGGCATGGTCATGCAAATTTTGTACACTGGAAAATAGCGTGAAGTTAGAGAAATGCGGAGCTTGTGGGCAATGGAGATATTCTTATGGCCAATCGATAGCAAACCCTTCGCCAAATGTGGGTACTTAA 1206 44.36 MNVGDLHKVLEIRTLKRKVGGDEARKFLEKIAKQVQPIMRKHKWTVKVLSEMCPKNPNLLGLNVWRGAHVKLRLRRQHTDWGWLPFDEVLDTMLHELCHNAISPHNAAFYKLWDELRKECEQLISEGISGAGAGFDLPGRRLGGFSRQPPLSSLRQTALLAAENRKRQGSLLPSGPKRLGGDKSIMSTLTPVQAAAMAAERRFQDDLWCGLEEIVEEEEEESGAGAPQENRNIRNSASSSGLGADTNANSLKRNRQETNDLPSQCCDGHPEQCFVDLTEVNKRSRQTEKDANMPSSHVFEKSCIDLTGDDDASTSNRKTECDTKSSRWECLMCTLLNPTLAPICELCGTHKPKAIEDKYKAWSCKFCTLENSVKLEKCGACGQWRYSYGQSIANPSPNVGT 401
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00251 401 ProSiteProfiles Zinc finger RanBP2 type profile. 324 353 IPR001876 -
Sain12g00251 401 MobiDBLite consensus disorder prediction 228 249 - -
Sain12g00251 401 ProSiteProfiles Zinc finger RanBP2 type profile. 358 387 IPR001876 -
Sain12g00251 401 SUPERFAMILY Ran binding protein zinc finger-like 324 351 IPR036443 -
Sain12g00251 401 Pfam WLM domain 8 203 IPR013536 -
Sain12g00251 401 ProSitePatterns Zinc finger RanBP2-type signature. 328 347 IPR001876 -
Sain12g00251 401 ProSitePatterns Zinc finger RanBP2-type signature. 362 381 IPR001876 -
Sain12g00251 401 SMART zf-4 326 350 IPR001876 -
Sain12g00251 401 SMART zf-4 360 384 IPR001876 -
Sain12g00251 401 MobiDBLite consensus disorder prediction 165 184 - -
Sain12g00251 401 ProSiteProfiles WLM domain profile. 1 204 IPR013536 -
Sain12g00251 401 MobiDBLite consensus disorder prediction 215 249 - -
Sain12g00251 401 Gene3D - 321 361 - -
Sain12g00251 401 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 400 IPR053000 GO:0005634(PANTHER)|GO:0006281(PANTHER)|GO:0008237(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00251 K22685 DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:4471732 Sain7g02249 Sain-Chr7:126031609 dispersed