AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00272 ATGCAATCCCAAAAATCTCTGCCGGATTCCGACCTACCGTCGCTCGCCGCCATCAAAGTCAAATCATCATCCCCTCGTTTTCGTTCTACGGCCAATCCTTCCGCCACCGAAACCCCCACTGCCGGTGCCCAACGCAGGATAGGCATCGCCGTCGATCTCAGTGATGAGAGCGCTTTTGCCGTCAAGTGGGCCGTCCATCAGTATCTCCGCCCCGGTGACGCCGTGATCCTCATCCACGTCCGTCCTACATCCGTCCTCTACGGCGCTGACTGGGGTTCCGTTGACCTTTCAATCGTCGATACTGACAATCAGGAATCGCAGCAGAAACTCGAAAATGATTTTGATACTTTCACGACTACGAAATCGGCTGACCTAGCGCAGCCTCTGGTGGACGAGCATATACCGTATAAGATCCATATTGTTAAAGATCATGATATGAAGGAGAGGCTTTGTTTAGAGGTGGAGAGGTTAGGGTTAAGTGCTGTCATCATGGGAAGCCGAGGGTTTGGTGCTACAAAGCGAGGGAGCGATGGCCGGCTTGGGAGCGTTAGTGATTACTGTGTGCGCCACTGTGTGTGTCCGGTGGTTGTTGTGAGGTATCCCGATGAGAAGGATGCTGCTGCTTCTGCTGAGCCGGTGGTTTCGGTGGCTGCTGCTGATGACGAAGAAGATGAACCTGAATTTCATGATGCAACTGATGAGCGGAAATGTTAG 714 52.8 MQSQKSLPDSDLPSLAAIKVKSSSPRFRSTANPSATETPTAGAQRRIGIAVDLSDESAFAVKWAVHQYLRPGDAVILIHVRPTSVLYGADWGSVDLSIVDTDNQESQQKLENDFDTFTTTKSADLAQPLVDEHIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGATKRGSDGRLGSVSDYCVRHCVCPVVVVRYPDEKDAAASAEPVVSVAAADDEEDEPEFHDATDERKC 237
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00272 237 Gene3D HUPs 34 211 IPR014729 -
Sain12g00272 237 PRINTS Universal stress protein signature 177 199 IPR006015 -
Sain12g00272 237 PRINTS Universal stress protein signature 44 62 IPR006015 -
Sain12g00272 237 MobiDBLite consensus disorder prediction 1 43 - -
Sain12g00272 237 Pfam Universal stress protein family 45 199 IPR006016 -
Sain12g00272 237 PANTHER OS01G0783500 PROTEIN 8 236 IPR044162 -
Sain12g00272 237 MobiDBLite consensus disorder prediction 23 41 - -
Sain12g00272 237 CDD USP-Like 46 198 - -
Sain12g00272 237 MobiDBLite consensus disorder prediction 205 237 - -
Sain12g00272 237 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 45 202 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00272 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:4931339 Sain1g01544 Sain-Chr1:102868889 dispersed