AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00279 ATGCCTATCTCCGACCACCGGCCGTCTCATTCAGCAGGAAAGCCCTGGTTACTATGTCCGTTTTGGCAATCTGGAACAGCTTCTTCGTCAACGCAGAATCTTCAATTTCAGAGTCAGAAAAGCCACGAAAACGGCGTCGCATCGAACGGTCGCTCTTCCAACAAGGTATCGTCGGTGGCGAAATCGCTCCTACCAACTAGGCGACGACTCCGCCTTGATCCAGCTAATAACCTTTACTTTCCTTATGAGCCTGGTAAACAAGTGAAAAGTGCTGTTCGGATCAAGAACCATAGCAGTTCTCATGTTGCTTTTAAGTTTCAAACAACTGCGCCAAAGAGCTGTTATATGCGACCTCCTGGTGGTATTCTGGCTCCCGGGGAAAGCATTTTTGCGACAGTTTTCAAGTTCGTTGAGCAACCAGAAAAAAACGAAAAACAGTTGGATCGAAGGAGCAAGGTTAAGTTCAAGATCATGAGCCTCAAGGTCAAAGAAGGAATCGACTATGTGCCTGAATTGTTCGAGGAGCAAAAGGATGAAGTAGTTGTTGAGCGAATATTACGTGTTATTTTCTTGAATGCGGAACGCCCTACCCCTGCATTGGAAAAACTAAAGCATCAACTGGCTGAAGCCGAGGCTGAATTAGAAGTACGCAAAAAACCTCACGTGGATACAAGTCCAAAAGTTGTTGGTCAAGGGCTTGTTATAGATGAATGGAAAGAACGAAGGGAGAAATACCTTGCTCGACAACAGGTTGAGGCTGTAGATTTGGTGTGA 774 45.74 MPISDHRPSHSAGKPWLLCPFWQSGTASSSTQNLQFQSQKSHENGVASNGRSSNKVSSVAKSLLPTRRRLRLDPANNLYFPYEPGKQVKSAVRIKNHSSSHVAFKFQTTAPKSCYMRPPGGILAPGESIFATVFKFVEQPEKNEKQLDRRSKVKFKIMSLKVKEGIDYVPELFEEQKDEVVVERILRVIFLNAERPTPALEKLKHQLAEAEAELEVRKKPHVDTSPKVVGQGLVIDEWKERREKYLARQQVEAVDLV 257
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00279 257 Pfam MSP (Major sperm protein) domain 70 178 IPR000535 -
Sain12g00279 257 SUPERFAMILY PapD-like 58 201 IPR008962 -
Sain12g00279 257 Gene3D Immunoglobulins 65 193 IPR013783 -
Sain12g00279 257 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 69 247 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Sain12g00279 257 MobiDBLite consensus disorder prediction 30 60 - -
Sain12g00279 257 ProSiteProfiles Major sperm protein (MSP) domain profile. 69 191 IPR000535 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00279 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:4993572 Sain9g02659 Sain-Chr9:163758267 dispersed
Sain Sain-Chr12:4993572 Sain1g01530 Sain-Chr1:102329670 transposed