Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00279 | ATGCCTATCTCCGACCACCGGCCGTCTCATTCAGCAGGAAAGCCCTGGTTACTATGTCCGTTTTGGCAATCTGGAACAGCTTCTTCGTCAACGCAGAATCTTCAATTTCAGAGTCAGAAAAGCCACGAAAACGGCGTCGCATCGAACGGTCGCTCTTCCAACAAGGTATCGTCGGTGGCGAAATCGCTCCTACCAACTAGGCGACGACTCCGCCTTGATCCAGCTAATAACCTTTACTTTCCTTATGAGCCTGGTAAACAAGTGAAAAGTGCTGTTCGGATCAAGAACCATAGCAGTTCTCATGTTGCTTTTAAGTTTCAAACAACTGCGCCAAAGAGCTGTTATATGCGACCTCCTGGTGGTATTCTGGCTCCCGGGGAAAGCATTTTTGCGACAGTTTTCAAGTTCGTTGAGCAACCAGAAAAAAACGAAAAACAGTTGGATCGAAGGAGCAAGGTTAAGTTCAAGATCATGAGCCTCAAGGTCAAAGAAGGAATCGACTATGTGCCTGAATTGTTCGAGGAGCAAAAGGATGAAGTAGTTGTTGAGCGAATATTACGTGTTATTTTCTTGAATGCGGAACGCCCTACCCCTGCATTGGAAAAACTAAAGCATCAACTGGCTGAAGCCGAGGCTGAATTAGAAGTACGCAAAAAACCTCACGTGGATACAAGTCCAAAAGTTGTTGGTCAAGGGCTTGTTATAGATGAATGGAAAGAACGAAGGGAGAAATACCTTGCTCGACAACAGGTTGAGGCTGTAGATTTGGTGTGA | 774 | 45.74 | MPISDHRPSHSAGKPWLLCPFWQSGTASSSTQNLQFQSQKSHENGVASNGRSSNKVSSVAKSLLPTRRRLRLDPANNLYFPYEPGKQVKSAVRIKNHSSSHVAFKFQTTAPKSCYMRPPGGILAPGESIFATVFKFVEQPEKNEKQLDRRSKVKFKIMSLKVKEGIDYVPELFEEQKDEVVVERILRVIFLNAERPTPALEKLKHQLAEAEAELEVRKKPHVDTSPKVVGQGLVIDEWKERREKYLARQQVEAVDLV | 257 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00279 | 257 | Pfam | MSP (Major sperm protein) domain | 70 | 178 | IPR000535 | - | |
| Sain12g00279 | 257 | SUPERFAMILY | PapD-like | 58 | 201 | IPR008962 | - | |
| Sain12g00279 | 257 | Gene3D | Immunoglobulins | 65 | 193 | IPR013783 | - | |
| Sain12g00279 | 257 | PANTHER | VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN | 69 | 247 | IPR016763 | GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER) | |
| Sain12g00279 | 257 | MobiDBLite | consensus disorder prediction | 30 | 60 | - | - | |
| Sain12g00279 | 257 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 69 | 191 | IPR000535 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00279 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:4993572 | Sain9g02659 | Sain-Chr9:163758267 | dispersed | |
| Sain | Sain-Chr12:4993572 | Sain1g01530 | Sain-Chr1:102329670 | transposed |