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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00282 ATGTTAGAAGGAAAAGCTGTGATCGGGGAGACGGATATGCTTCAGACCATGCAACAAGATGCACTTGAACTCGCAGCTAAAGCACTCGACTTCTTTGATGTAACTGACGCTACTGAAATCGCACGAGTCATTAAACAGGAATTTGACAGGATGTATGGAGGTGGTTGGCAGTGTATTGTAGGGACTGATTTTGGGTCATTTGTGACTCATTGTTCAGGTTCTTTCATCCATTTTTGTATTGGGAGTCTTGCCATTTTGCTGTTTAGAGGATCATCAGCACTTCCAGAGAAGAATAATATTGATGATTAA 309 41.42 MLEGKAVIGETDMLQTMQQDALELAAKALDFFDVTDATEIARVIKQEFDRMYGGGWQCIVGTDFGSFVTHCSGSFIHFCIGSLAILLFRGSSALPEKNNIDD 102
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00282 102 Pfam Dynein light chain type 1 5 89 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
Sain12g00282 102 CDD DLC-like-DYNLL1-DYNLL2 5 89 - -
Sain12g00282 102 SMART Dynein-light-2 1 90 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
Sain12g00282 102 FunFam Dynein light chain 1 90 - -
Sain12g00282 102 PANTHER DYNEIN LIGHT CHAIN 7 89 IPR001372 GO:0005868(PANTHER)|GO:0007017(InterPro)|GO:0030286(InterPro)|GO:0045505(PANTHER)
Sain12g00282 102 SUPERFAMILY DLC 1 90 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Sain12g00282 102 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 2 90 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00282 K10418 dynein light chain LC8-type
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Event-related genes

Select Gene_1 Gene_2 Event_name
138687 Sain12g00282 Sain3g00099
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:5020917 Sain3g02529 Sain-Chr3:154931247 dispersed
Sain Sain-Chr12:5020917 Sain13g00241 Sain-Chr13:8086161 transposed