AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00288 ATGACTCATAAACAGGAGACTTTGATTGGTTCTGGGATATGTGTAGCGATTTCGGTTCTCTTATCGTTGAAGTTGGTTCGAGATCATCTTTCTAACTGGAAGAAGCCCAAGGAGCAGAAGGCGATCATAGTGATAATCCTCATGGCTCCCATTTACGCTGTTGATTCGTATGTCGGATTGCTTGATGTTCGTGGCGGTGAGACCTTTTTCGTCTTCTTGGACTCGGTCAAAGAGTGCTACGAGGGTCTGGTGATGGCCAAGTTCTTGTCTTTGTTGTATACCTACTTGAATATCTCTATAAGCAAGAACATAGTCCCAGATGAGATCAAAGGAAGAGAGATTCACCACTCCTTCCCGATGACTCTCTTCCAACCACACTCGGTTCGTCTGAATCATCAGAACCTGAAGCTCCTCAAGTATTGGACATGGCAGTTTGTAGTGATTCGCCCTGCCTGCTCTGTTTTAATGATAGTTCTACAACTTGTTGAGGTATATCCCGATTGGCTTAGCTGGACGTTCACCATGATCTTGAACGTATCGGTTTCGTTGGCGTTATACTCCCTCGTGATTTTCTACCATGTGTTTGCTAAAGAATTAGCACCACATAACCCTCTAGCCAAGTTTTTATGTGTCAAAGGGATTGTCTTCTTCTGTTTTTGGCAGGGAATCGTAATTAGCGGTCTCGTGGCAATGGGCGTAATCAAATCAAATCATTTTTGGCTGGACGTGTCGCAACTTCAGCAAGCGCTGCAAAACGCCTTGGTGATTGTGGAGATGGTGTTTTTTTCGATCTTTCAGATGTATGCATACACTGCTGCACCTTACAAGGATGCCGACGTGAAACAAAAGAAGACGGATTGA 861 44.37 MTHKQETLIGSGICVAISVLLSLKLVRDHLSNWKKPKEQKAIIVIILMAPIYAVDSYVGLLDVRGGETFFVFLDSVKECYEGLVMAKFLSLLYTYLNISISKNIVPDEIKGREIHHSFPMTLFQPHSVRLNHQNLKLLKYWTWQFVVIRPACSVLMIVLQLVEVYPDWLSWTFTMILNVSVSLALYSLVIFYHVFAKELAPHNPLAKFLCVKGIVFFCFWQGIVISGLVAMGVIKSNHFWLDVSQLQQALQNALVIVEMVFFSIFQMYAYTAAPYKDADVKQKKTD 286
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00288 286 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 7 279 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
Sain12g00288 286 Pfam Organic solute transporter Ostalpha 8 275 IPR005178 -
Sain12g00288 286 SMART Solute-trans-a-2 7 275 IPR005178 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00288 K14360 organic solute transporter subunit alpha
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:5135748 Sain14g02219 Sain-Chr14:92323351 dispersed
Sain Sain-Chr12:5135748 Sain9g01354 Sain-Chr9:64490291 transposed