AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00295 ATGGAGGGTATTGATGCTAACAAGTATGCTAAAGAATTAGAAGTGGGTGTTCGAGTTGTACAACTGGCATGTTCTCTGTGCCAGAAGGTGCAAAAGGGTTCGGTTGGTCCCAACCCTGATCAGGTCATTTCAAAAGACGACGATTCACCTGTTACTGTCGCCGATTGGAGTGTACAAGCAACGATTAGCTGGATATTATCCGAATCATTTGGTAGAGAAAACGTCTCGATTGTTGCTGAAGAAGACGCTCAAACACTCTCCGATGCCAATGCCACAAGTTTACTAGCATCCGTGGTTGCAACCGTGAACGAAAGTTTGGCTATAGCACCCAGGTTCGGTCTCAAGAGCCCAGCCGCACCCCTTGGGGCTTCAGAAGTTCTTGATGCCATAAGCCGATGCAATTCAACCGGGGGCCCAGTGGGCCGCCATTGGGTCCTTGACCCTGTTGATGGAACTTTAGGGTTCGTGCGTGGAGACCAGTATGCCGTGGCTCTGGCTTTTATTGAAAACGGGCAGGTTATGGTTGGAGTTCTTGGGTGCCCGAATTATTCGAGTAAAAAGAAATTGGTGAATAATTCAAGTAATTTGAAATTATCGTCGGATTTGTGGCAAGAAGGGTGTGTTATGTACACGAGAAAAGGTAGTGGTCAAGCTTGGATGCAGCCGTTGGTTCATGGTGACGGGGTCTTGGAGTGGCCCAACTCGGCTAGCGTTATAAGGGTTTCTTCCATTGATAACCCTGCAATGGCTACGTTTTGTGAACCGGTGGAGAAAGCCAACTCAAACCATTCTTACACTGCTGGACTCGCGTATAGTTTAGGACTTAGAAAGCAGCCGTTGCGTGTGTATAGCATGGTGAAATACGCGGCAATAGCGCGTGGGGATGCGGAGATATACATGAAGTTTGCAAAGGCTGGATACAAGGAGAAGATATGGGATCATGCTGCTGGTGTGGTGATTGTGGAGGAGGCTGGCGGAGTTGTGACGGATGCTGGTGGTCGGCCACTGGATTTCTCGAGAGGGGTGTATCTTGAAGGTGTTGATAGGGGGATCGTTGCGTGTTCTGGGGTGAATTTGCATGAGAAAATTGTTGGGGCTGTTTATGCAAGCTGGGATTCCTCTCACCTTTGA 1131 48.72 MEGIDANKYAKELEVGVRVVQLACSLCQKVQKGSVGPNPDQVISKDDDSPVTVADWSVQATISWILSESFGRENVSIVAEEDAQTLSDANATSLLASVVATVNESLAIAPRFGLKSPAAPLGASEVLDAISRCNSTGGPVGRHWVLDPVDGTLGFVRGDQYAVALAFIENGQVMVGVLGCPNYSSKKKLVNNSSNLKLSSDLWQEGCVMYTRKGSGQAWMQPLVHGDGVLEWPNSASVIRVSSIDNPAMATFCEPVEKANSNHSYTAGLAYSLGLRKQPLRVYSMVKYAAIARGDAEIYMKFAKAGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSRGVYLEGVDRGIVACSGVNLHEKIVGAVYASWDSSHL 376
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00295 376 PRINTS Inositol monophosphatase superfamily signature 309 333 IPR000760 -
Sain12g00295 376 PRINTS Inositol monophosphatase superfamily signature 144 160 IPR000760 -
Sain12g00295 376 ProSitePatterns Inositol monophosphatase family signature 1. 144 157 IPR020583 -
Sain12g00295 376 FunFam PAP-specific phosphatase HAL2-like 240 373 - -
Sain12g00295 376 Pfam Inositol monophosphatase family 48 367 IPR000760 -
Sain12g00295 376 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 9 374 IPR006239 GO:0006790(InterPro)|GO:0008441(InterPro)
Sain12g00295 376 ProSitePatterns Inositol monophosphatase family signature 2. 312 326 IPR020550 GO:0046854(InterPro)
Sain12g00295 376 PANTHER PHOSPHATASE 6 372 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
Sain12g00295 376 Gene3D - 240 370 - -
Sain12g00295 376 Gene3D - 7 229 - -
Sain12g00295 376 SUPERFAMILY Carbohydrate phosphatase 9 369 - -
Sain12g00295 376 CDD PAP-phosphatase 12 369 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00295 K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:5325413 Sain9g02729 Sain-Chr9:166548712 dispersed
Sain Sain-Chr12:5325413 Sain12g00297 Sain-Chr12:5411962 proximal