AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00296 ATGGGGAAAACAGGAAGAGATTGGACACAGATCTACGCAATCTATGGTATGGATGATTGGCACACACCGATTTTTCTCTTGATCCACGGGATTGTCTTCTCAGCTTCTTCACTCGTATTCCTTCTATACTTCAATTGGATCTGCTACTCCTTCGAATCAATCTTCCCGTCAGTATTCTCCGGCAGTGTCGCCAGATTCGCCGCCGGATTCACCGGCTCCGTCACAGCTCTCTCCGCCGTTTGCCTCTTCTACGCTGCCGGCAACATGTTCTACTCCTCCGTCGCCCTCCGCTGGGACATGGCCCAGCGCATGGTCAACGCCGTCCACGACTGGTCAACCGTGAAGACCGTACTTGACGTCGGCTGCGGCCGCGGCATCCTTCTCAACGCCGTCGCCATGCAGCTCAAAAAAGAAGGCAGTTCGGGTCGGGTCGTAGGGTTAGACCGTAAGAACACGACGTTATCAACCCTAAGAACGGCAAAAATGGAAGGCGTGCAGGAGTACGTGACTTGCCGTGAAGGCGACGCGCGTAGGCTTCCTTTTCCTGACAATTACTTCGACGTGGTGGTGTCGGCGGGGTTTGTGCACAAGGTGGGGAAAGAGTTCGGGCAGAAATCAGCGGCGGCATCGGCGGAGAGGATGAGAGTGATGGGGGAGGTGGTTAGGGTTTTGAAGGAGGGTGGGATCGGAGTGGTGTGGGACCTGGTGCACGTGCCGGAGTACGTTCTCCGGTTACAAGAGCTAAAGATGGAGGAGATCAGAGTATCGGAGAGGGTAACGGCGTTTATGGTGAGCAGCCACATTGTGTCGTTCCGGAAACCCAGCCAGCACGTGCTGGGTCCCAATGAAGTGAGATTGGATTGGAGATTCAACAATATCTGTTGA 885 54.69 MGKTGRDWTQIYAIYGMDDWHTPIFLLIHGIVFSASSLVFLLYFNWICYSFESIFPSVFSGSVARFAAGFTGSVTALSAVCLFYAAGNMFYSSVALRWDMAQRMVNAVHDWSTVKTVLDVGCGRGILLNAVAMQLKKEGSSGRVVGLDRKNTTLSTLRTAKMEGVQEYVTCREGDARRLPFPDNYFDVVVSAGFVHKVGKEFGQKSAAASAERMRVMGEVVRVLKEGGIGVVWDLVHVPEYVLRLQELKMEEIRVSERVTAFMVSSHIVSFRKPSQHVLGPNEVRLDWRFNNIC 294
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00296 294 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 91 247 IPR029063 -
Sain12g00296 294 Gene3D Vaccinia Virus protein VP39 84 260 IPR029063 -
Sain12g00296 294 CDD AdoMet-MTases 116 236 - -
Sain12g00296 294 PANTHER EXPRESSED PROTEIN 1 289 - -
Sain12g00296 294 Pfam Methyltransferase domain 118 230 IPR013216 GO:0008757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00296 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:5336428 Sain12g00298 Sain-Chr12:5423135 proximal
Sain Sain-Chr12:5336428 Sain9g00223 Sain-Chr9:5281150 wgd